Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5888g00003 ATGGCCACACAACTTCACTTGCCCCCTGGATTCAGATTCCACCCCACCGATGAAGAACTCGTCATCCACTACCTTTGCCGCAAATGCGCCTCTCAACAAATCTCTGTTCCTATCGTTGCTGAAATCGACCTCTACAAGTACGACCCATGGAACCTTCCTGGAAAGGCCTTGTACGGAGAGAAAGAGTGGTATTTTTTCACGCCGAGGGAGAGGAAGTACCCGAACGGTTCGCGGCCGAATCGGTCTGCCGGAACCGGGTACTGGAAGGCGACCGGAGCGGATAAACCGGTTGGTAAACCGAAACCGGTTGGAATTAAGAAAGCGTTGGTTTTTTACTCTGGAAAAGCACCCAAAGGAGAGAAAACCAATTGGATCATGCACGAGTATCGTCTCGCCGACGTAGATCGTTCCGTTCGCAAAAAGAACACTTTGAGGCTGGATGACTGGGTGCTGTGTCGCATTTACAACAAGAAAGGCGCAGTTAACATTGGACGTTCTGAAATGGAGGACAAGAAGCCTGAGATTGTGACACGTGGCGGCGGTCTTCAGCAGCCTGTGGCCACGAAGGTGGCGGATCTCGTGTACTTCGAGGCCTCCGACTCGGTGCCGCGTCTGCACACGACGGACTCGAGCTGCTCCGAGCAGGTGGTGTCGGCGGAGTTTGCGAGCGAGGTGCAGAGCGAGCCCAAGAGGGACAACGAGTTTGCATATAATTACGTGGATGCCACTCTGGGGTCGCAGTTCCAGAGCGGGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCCAAGCCATTCTGA 807 0.5378 MATQLHLPPGFRFHPTDEELVIHYLCRKCASQQISVPIVAEIDLYKYDPWNLPGKALYGEKEWYFFTPRERKYPNGSRPNRSAGTGYWKATGADKPVGKPKPVGIKKALVFYSGKAPKGEKTNWIMHEYRLADVDRSVRKKNTLRLDDWVLCRIYNKKGAVNIGRSEMEDKKPEIVTRGGGLQQPVATKVADLVYFEASDSVPRLHTTDSSCSEQVVSAEFASEVQSEPKRDNEFAYNYVDATLGSQFQSGNQMSPLQDIFMYLSKPF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5888g00003 268 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Mupr5888g00003 268 PANTHER NAC TRANSCRIPTION FACTOR 56 7 206 - -
Mupr5888g00003 268 FunFam NAC transcription factor 16 161 - -
Mupr5888g00003 268 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Mupr5888g00003 268 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Mupr5888g00003 268 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5888g00003 Mupr-Chr5888 8506 9746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5888g00003 1 268 NAC Transcription Factor Family AT1G01720 68.493 2.11e-144 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mupr5888g00003 NAM 4.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5888g00003 - - gmx:100170714 443.351