Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5882g00007 ATGTCAATGGAAATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATACAGCAGTTTGCTAACCTTAGTGACGGTTAGATGTGGACATTGTGCCAATTTGCTATCAGTTAACATGGGAGCGTCACTTCAAGCATTTCCTCCTCAAGACCCTCAGAAACAGCACCTAAGCTTCGCAGAACCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAACTAGCGCCATTTGAGGCAGTAGAGCATGAACAACCTAGGATTCCTCCAATTCGTCCTACAGAGAAGAGACATCGCGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCGGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGGAACAAGCAAGGAAAGTTGGACCAGGGGGAAGGAGGTGAAAAGTCTAATGGATTCTACTGA 543 0.4549 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTLVTVRCGHCANLLSVNMGASLQAFPPQDPQKQHLSFAEPSSKELGSSSKCNKLAPFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNKQGKLDQGEGGEKSNGFY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5882g00007 180 CDD HMG-box_SF 111 147 - -
Mupr5882g00007 180 SUPERFAMILY HMG-box 102 150 IPR036910 -
Mupr5882g00007 180 Pfam YABBY protein 7 157 IPR006780 GO:0007275
Mupr5882g00007 180 PANTHER PROTEIN YABBY 6-RELATED 1 166 IPR006780 GO:0007275
Mupr5882g00007 180 MobiDBLite consensus disorder prediction 158 180 - -
Mupr5882g00007 180 Gene3D High mobility group box domain 95 152 IPR036910 -
Mupr5882g00007 180 FunFam axial regulator YABBY 5-like 95 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5882g00007 Mupr-Chr5882 27692 34803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5882g00007 1 180 C2C2-YABBY Transcription Factor Family AT1G08465 66.845 6.30e-84 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mupr5882g00007 YABBY 4.4e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5882g00007 K25796 - gmx:100500091 356.295