Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5881g00002 ATGATGCAGCCTGGACCTGGCATGGCCCAACAGCCGAACCAGCAATACCCACAGCAACAGCAACAGCAGCAACCCTACATGATGATGCCGCAGCAGGCACAGCCCCCTCCCATGTGGGCCCCATCGGCCCAGCCTCCGCCGCAATCAGTGGCTCCTCCGCAACCTACCAGCGCCGATGAGGTCCGCACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAATTATCTTTACACGTGTTTCGCACACACCGGCGAGGTGTCCTCGGTTAAAGTCATTCGGAATAAGCAAACTAGTCAATCAGAGGGATATGGGTTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAGGCATACAATGGAACCATTATGCCAAATGGCGGGCAGAACTTCAGATTGAACTGGGCAACTTTTAGTGCGGGTGAGAGGCGTCACGATGACGGCCCGGATCACACCGTCTTTGTTGGAGACCTGGCTGCAGATGTTACAGATTATCTTCTTCAAGAGACATTTCGGGCTCGGTTTCCCTCGGTTAAGGGGGCCAAGGTTGTAATTGATAGGCTCACCGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGCGAATTGGACCGGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGGGTGTCAAGAGGCTCTGTCATCTCGGAGCCTGGAACTGATTTCAGCTGAAATGATTTTTGTCGGCAATTTGGATCCCAATGTCACGGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTGGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTTCAATTTGCTGAGAGGAGCTGTGCAGAAGAGGCACTGCGGCTTTTAAATGGCACACTTTTAGGTGGACAAAATGTTCGTCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGGTCAACCAGATCCAAACCAGTGGAATGGTAGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCCGGACAGGACCCCAATATGTATGGCAGTTATCCTGGCTATGCAAATTACCAACCTCCCCAGCAACAGCAACAAATAGGATATAGCTAA 1188 0.4975 MMQPGPGMAQQPNQQYPQQQQQQQPYMMMPQQAQPPPMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVSSVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQAYNGTIMPNGGQNFRLNWATFSAGERRHDDGPDHTVFVGDLAADVTDYLLQETFRARFPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKGCQEALSSRSLELISAEMIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFAERSCAEEALRLLNGTLLGGQNVRLSWGRSPSNKQGQPDPNQWNGSGGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5881g00002 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 333 IPR000504 GO:0003723
Mupr5881g00002 395 FunFam Polyadenylate-binding protein RBP45 5 146 - -
Mupr5881g00002 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 129 IPR000504 GO:0003723
Mupr5881g00002 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 326 IPR000504 GO:0003723
Mupr5881g00002 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Mupr5881g00002 395 SUPERFAMILY RNA-binding domain, RBD 25 143 IPR035979 GO:0003676
Mupr5881g00002 395 Gene3D - 252 367 IPR012677 -
Mupr5881g00002 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 142 IPR000504 GO:0003723
Mupr5881g00002 395 MobiDBLite consensus disorder prediction 1 29 - -
Mupr5881g00002 395 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 53 337 - -
Mupr5881g00002 395 SMART rrm1_1 156 230 IPR000504 GO:0003723
Mupr5881g00002 395 SMART rrm1_1 63 138 IPR000504 GO:0003723
Mupr5881g00002 395 SMART rrm1_1 262 329 IPR000504 GO:0003723
Mupr5881g00002 395 MobiDBLite consensus disorder prediction 30 53 - -
Mupr5881g00002 395 MobiDBLite consensus disorder prediction 375 395 - -
Mupr5881g00002 395 SUPERFAMILY RNA-binding domain, RBD 150 243 IPR035979 GO:0003676
Mupr5881g00002 395 MobiDBLite consensus disorder prediction 381 395 - -
Mupr5881g00002 395 FunFam Polyadenylate-binding protein RBP45C 147 239 - -
Mupr5881g00002 395 Gene3D - 147 247 IPR012677 -
Mupr5881g00002 395 SUPERFAMILY RNA-binding domain, RBD 262 358 IPR035979 GO:0003676
Mupr5881g00002 395 CDD RRM2_SECp43_like 154 233 - -
Mupr5881g00002 395 CDD RRM1_SECp43_like 63 143 - -
Mupr5881g00002 395 Gene3D - 6 146 IPR012677 -
Mupr5881g00002 395 MobiDBLite consensus disorder prediction 1 57 - -
Mupr5881g00002 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 234 IPR000504 GO:0003723
Mupr5881g00002 395 FunFam polyadenylate-binding protein RBP45 249 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5881g00002 Mupr-Chr5881 6588 10350 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5881g00002 154 326 Eukaryotic Initiation Factors Gene Family AT4G34110 29.213 2.32e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5881g00002 - - gmx:100796848 611.683