Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr587g00003 ATGCAGGTTGATGAGTTTCCCGAAAGGCCTGGTGAATCCGAATGCATATCTTTCAAAAGAACTGGGGATTGCAAGCTTAAATCTGAATGTATGTTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATCACCTCCATGCCTCAATGACATGGGTCTACCTTTGAGACCGCTTTTCCCAAATAACTATGATCTTTGGGCCGTCAAAATGGAGGTTTACCTAGAGGCTTTGGATCTTTGGGAAGTTGTAGAAGAGGATTATGAAGTCCTTCCAATGCCGGACAATCCCACCATGGCCCAGATTAAGAATCACAAGGAGAAAAAAACCTGA 333 0.4354 MQVDEFPERPGESECISFKRTGDCKLKSECMFHHPKNRIARLPPSPPCLNDMGLPLRPLFPNNYDLWAVKMEVYLEALDLWEVVEEDYEVLPMPDNPTMAQIKNHKEKKT 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr587g00003 110 Pfam Domain of unknown function (DUF4219) 62 85 IPR025314 -
Mupr587g00003 110 SUPERFAMILY CCCH zinc finger 13 38 IPR036855 GO:0046872
Mupr587g00003 110 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Mupr587g00003 110 PANTHER PROTEIN PHOSPHATASE RELATED 1 58 - -
Mupr587g00003 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 11 36 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr587g00003 Mupr-Chr587 20121 21533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr587g00003 6 61 C2H2 Transcription Factor Family AT3G02830 53.571 6.23e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr587g00003 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr587g00003 - - gmx:106798773 98.9821