Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5854g00002 ATGAATGACTTGTTCTCCACCACCTCCTCCGCCCGCAGCGAGCAACCGTCGCAATCGCCGGACCACCACGCCATCGAGATTCCCGGCGGAGTGAACCTGAACAAGTTCTTCGACGACGTTGAAGCGATAAAAGAGAACCTGAACGAGGTGGAGCGGTTGAAGCAGAATCTGAAGAGGTCCAACGAAGAGAGCAAAACGCTTCACCGTGCCAACGCCGTGAAGGACCTTCGCTCCACGATGGAAGCTGACGTGGTACTCGCAGTCAAGAAAGTGAAGCTCATCAAGCTCCAACTGGAAGCTCTGGAGCGTTCCAACGCCGATGATCGAAGCCTCCTCGGTTGCGGACCCGGATCCTCCTCCGACCGGACTCGAATCTCCGTCGTCGCCGGGTTGAAGAAGAATTTGAAGGACTCCTTGGACGGCTTCAATGAACTCCGCCACAAGATCAACTCAGAACACCGTGACACCGTTCAACGCCGCTATTTCACCGTCACCGGCCAGAACCCCGACGACAAAATTGTCGACCTCTTGATCTCTACCGTGTGTGAAATGGGATTGGGTGCAGGTGAGAGTGAGAGGTTCCTACAGAAAGCGATCGAAGAGCAGGGGAGGAGTAGAATTGAAGAGACAATTAAGGAAATTAAAGAGAGGCATGATGGATTGAAAGAGTTGGAGAAGAATCTTAAGGAGTTGCATGAGGTGTTCCTTGACATGGCAGTGCTGATGCAATCTCAAGGGGAGCAATTGAACAATATAGAGAGCCACATGGCAAGAGCTAACTCGTTCGTGAGGCATGGGACTGAGCAGCTCCAAAGTGCAAGGAAGAAGCAGAAAAATTCCCGAAAATGGATCTGTTACGCTGCTATCCTTCTTCTACTCATCGTCTTCTTTGTGGTGCTCTTCACTGTAAGACCATGGGAACATAAAACCAGTGGTGGTTACCAAAGGTTGGAATTAGATGTTTTTTAA 969 0.5067 MNDLFSTTSSARSEQPSQSPDHHAIEIPGGVNLNKFFDDVEAIKENLNEVERLKQNLKRSNEESKTLHRANAVKDLRSTMEADVVLAVKKVKLIKLQLEALERSNADDRSLLGCGPGSSSDRTRISVVAGLKKNLKDSLDGFNELRHKINSEHRDTVQRRYFTVTGQNPDDKIVDLLISTVCEMGLGAGESERFLQKAIEEQGRSRIEETIKEIKERHDGLKELEKNLKELHEVFLDMAVLMQSQGEQLNNIESHMARANSFVRHGTEQLQSARKKQKNSRKWICYAAILLLLIVFFVVLFTVRPWEHKTSGGYQRLELDVF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5854g00002 322 PANTHER SYNTAXIN 41 296 IPR045242 -
Mupr5854g00002 322 Gene3D - 200 304 - -
Mupr5854g00002 322 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Mupr5854g00002 322 MobiDBLite consensus disorder prediction 1 20 - -
Mupr5854g00002 322 Coils Coil 33 70 - -
Mupr5854g00002 322 CDD SNARE_syntaxin1-like 210 271 - -
Mupr5854g00002 322 CDD SynN 33 198 IPR006011 GO:0016020
Mupr5854g00002 322 Gene3D - 31 163 - -
Mupr5854g00002 322 Coils Coil 204 234 - -
Mupr5854g00002 322 Pfam Syntaxin 35 246 IPR006011 GO:0016020
Mupr5854g00002 322 SMART tSNARE_6 206 273 IPR000727 -
Mupr5854g00002 322 SMART SynN_4 28 154 IPR006011 GO:0016020
Mupr5854g00002 322 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Mupr5854g00002 322 Pfam SNARE domain 247 299 IPR000727 -
Mupr5854g00002 322 FunFam Syntaxin 132 204 304 - -
Mupr5854g00002 322 MobiDBLite consensus disorder prediction 1 25 - -
Mupr5854g00002 322 SUPERFAMILY t-snare proteins 31 266 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5854g00002 Mupr-Chr5854 26161 27457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5854g00002 29 310 SNARE and Associated Proteins AT3G11820 62.057 2.95e-120 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5854g00002 K08486 - jre:108982862 383.645