Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mupr5835g00003 | ATGACTAGAAAGAAGGTGGACCTTATGTACATAACCAATGCCTCGAAGAGAAAAATAACATTAAAGAAAAGGAAAAATGGTTTGATAAAGAAAATGGACGAAATTAGCACTCTTTGTGAGATAGAAGCATGTGCTATAATCTATACTCCAAATGATCCTAAACCTGAAGTATGGCCATCTGATTCAGGAGTGAAAAGGGTGATTTCTAGGTTCAGGGGATTGTCAGAACTGAAACAAAGCAAAAAAATGTTGAATCAAGAGAGCTTGTTAAGGCAAATGATCACCAAGGCCCAAGAGCAGCTGAGGAAACAAAGGAATGAAAACAGGAAGAAAGAAATGACCCATCTTATGTTTCAATACCTGACTCTTGGGAAGATTTTTGACAATCCTAGCTTGATAGATTTGAATGATCTTTTATGGTTGATTAATCTGAACTTGAATGAAATTGAAAAGAATATCAATAAGATCCAAATCCAAGAAGTGACACCAATCATTGAAAATGGAGGACCACAAGGACACTTGCATCATGTCCAAGGGCTAGAGACCAACATGGACACCGTGCAAAAGCGATATTGA | 576 | 0.3715 | MTRKKVDLMYITNASKRKITLKKRKNGLIKKMDEISTLCEIEACAIIYTPNDPKPEVWPSDSGVKRVISRFRGLSELKQSKKMLNQESLLRQMITKAQEQLRKQRNENRKKEMTHLMFQYLTLGKIFDNPSLIDLNDLLWLINLNLNEIEKNINKIQIQEVTPIIENGGPQGHLHHVQGLETNMDTVQKRY | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mupr5835g00003 | 191 | ProSiteProfiles | MADS-box domain profile. | 1 | 51 | IPR002100 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
Mupr5835g00003 | 191 | PANTHER | MADS BOX PROTEIN | 3 | 154 | - | - | |
Mupr5835g00003 | 191 | Gene3D | - | 14 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | Coils | Coil | 177 | 191 | - | - | |
Mupr5835g00003 | 191 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Mupr5835g00003 | 191 | Coils | Coil | 87 | 114 | - | - | |
Mupr5835g00003 | 191 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Mupr5835g00003 | 191 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mupr5835g00003 | Mupr-Chr5835 | 26992 | 27766 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mupr5835g00003 | 1 | 153 | Type I MADS-box Gene Family | AT5G48670 | 54.902 | 5.14e-46 | 152 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Mupr5835g00003 | SRF-TF | 1.6e-15 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mupr5835g00003 | - | - | gmx:100797590 | 264.233 |