Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5828g00001 ATGGGGGAAAGAATGGAGAGAGGGGTGGGGGGTAGTAACAAGAAGAGTCACTGCAAGTGTGTGTCTGTTACAGGAAGGAAGAGAAGAGAAGAGAAGAGAGCGAGATTGTGGGAGGCAAAGCAAAACAAAAGAAAAGAAAAGAGTAGTAGTCCAGTGAGTGAGTCCATGGGAGAAACAGGTATCATTGTTCGATACACTGGTAGCTTAGACCCCAGAGCCGAAGAGTTCAGACCCACTTACCCCATTTCATGGTATCCTCTTACTCTTCCACTTCCTCTTCCTCTACCAGTTCCACCACCACCTCCGCCGCCGCCGCCGCACCTCTCCACCACCTCCACCCGGTCCCTCCTCCTGACCCCAGTACCCATCACGACGGAGTCTGCCCTGAGAAGCGAACTGGAGGTGTTCGGCGACGTCAGAGCTCTCCAAATGGAAGGCCTCCGCCATGGAATGGTGACGGTCCACTTCTATGACCTCCGCCATGCAGAGAGCGCCTTCGCGGCCATCAGCACCATGCACCACTATCCCCCTCCTCAATTCATCACCGGGCCGGGCCTCGTCGCGGGCCGTCCTGTCTGGGCCCACTACGTCCTCCCCTCTCCCGACACCCACAACCAGGGCACCCTCGTCGTCTTCAACTTGGACGCTAACGTCTCCACACTAAACCTTCGTCGACTCTTCGACCCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACAAGAGACGCAGCTAAGGCTTTGAAACAGATGAACGGCAAGGATTTTCACGGTAAGCCCCTTGTGATTGAGTTCAGCAGACCCGGTGGTCACACTCGCAAGTTCTTCCACTCTCCTCCCTCTTCCAAAGCAACCACTCCTCTCAATTTCAATGTTCCTCCTTCCCCCCGACGTCGTTTTCCTGCTCCTCGCTTGTCTCACCATGTTACGGGATCTGTTGACGACCCTTTGACCGATCACGAAAATGGATTTGAACATGCTCCACCCCCAAGGAGAACTCTTAACAGAAAGCACAATTGCGAGACCACAGTATTAGGAAACACGAAGCAGCAACAACAAGTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACATGAAACTCGCTTTCTAATCAAAGAGGATCCCATTGTTGAGTCCGGTCCTAGAGATACTAGAACTACTGTCATGATCAAGAACATTCCCAACAAGTACAGTCAGAAGCTGCTATTAAACATGCTGGATAACCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTATATCTTCCTACGACTTCGTCTACCTTCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTTGTGAACATGACATCCCCGGAGGCAACACTGAGGCTCTACAAGGCCTTCCATCTCCAACATTGGGAGGTATTTAATTCCAGAAAAATCTGTGAAGTCACCTATGCGAGAGTTCAGGGTTTGGAAGCGTTGAAAGAGCACTTTAAGAACTCAAAGTTCCCGTGCGAGATGGAGCATTACCTGCCGGTGGTGTTTTCACCGGCTCGAGATGGGAGGGAACTGACGGAGCCACTACCAATAGTGGGGAACAAGATATCAATAACGATATCAATTCCAAATCGAAATGGAAAGTGTGATGATGATGACGTGGTTAGCAGCAAAAGCGGCGGCGTAGGTGATGATGATGATGATGACAGAAAAGAAGAAGGAGGAGGCGTGGTAACTTGTGAAGGAAGGCTAGTAGTGTTG 1791 0.5064 MGERMERGVGGSNKKSHCKCVSVTGRKRREEKRARLWEAKQNKRKEKSSSPVSESMGETGIIVRYTGSLDPRAEEFRPTYPISWYPLTLPLPLPLPVPPPPPPPPPHLSTTSTRSLLLTPVPITTESALRSELEVFGDVRALQMEGLRHGMVTVHFYDLRHAESAFAAISTMHHYPPPQFITGPGLVAGRPVWAHYVLPSPDTHNQGTLVVFNLDANVSTLNLRRLFDPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKQMNGKDFHGKPLVIEFSRPGGHTRKFFHSPPSSKATTPLNFNVPPSPRRRFPAPRLSHHVTGSVDDPLTDHENGFEHAPPPRRTLNRKHNCETTVLGNTKQQQQVPRSRHWKGKQAKKHETRFLIKEDPIVESGPRDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPISSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPARDGRELTEPLPIVGNKISITISIPNRNGKCDDDDVVSSKSGGVGDDDDDDRKEEGGGVVTCEGRLVVL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5828g00001 597 CDD RRM3_EAR1_like 400 501 IPR034458 -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 290 304 - -
Mupr5828g00001 597 Gene3D - 201 286 IPR012677 -
Mupr5828g00001 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 280 IPR000504 GO:0003723
Mupr5828g00001 597 PANTHER RNA RECOGNITION MOTIF-CONTAINING 397 521 - -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 559 575 - -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 559 585 - -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 1 58 - -
Mupr5828g00001 597 Gene3D - 349 505 IPR012677 -
Mupr5828g00001 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 273 IPR000504 GO:0003723
Mupr5828g00001 597 FunFam Terminal EAR1-like 1 349 506 - -
Mupr5828g00001 597 SMART rrm1_1 208 276 IPR000504 GO:0003723
Mupr5828g00001 597 Pfam RNA recognition motif 2 400 510 IPR007201 -
Mupr5828g00001 597 SUPERFAMILY RNA-binding domain, RBD 208 479 IPR035979 GO:0003676
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 358 379 - -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 288 315 - -
Mupr5828g00001 597 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5828g00001 Mupr-Chr5828 5629 8133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5828g00001 209 340 Eukaryotic Initiation Factors Gene Family AT2G23350 31.387 5.32e-07 50.8