Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5815g00001 ATGTATCGCTGGGTTCCTGTTGCTTGCAGGACGCGTAGCAAGGAGGGAAGGGTGATTGTTAGTGACTTAATAATGGGTCGGAAGAGGAAAAGGGTGGACGACGATGAAGTGATTTTGTTGGAGGAAAACTCAGGTGAAGGTGAAGGTGCAACTGGGAAAATTGAATCTGGGTCTGGAGCTTCATCTTCATCTGGTGCACCTGCTTTGAAGCGTGGAAGAGTGTCTGAACGTGGTTTTGAGTGTTTGGGAGAGCATGCAGATTATCCTATTGAAATCGGTGACAGTGATGATGACATTGAGGCTGAAGAGGGGTTGATCCATTGTGGGAATAAGAGGTTTGAGGTTAACGAGGAAGGGAGGAGTGAGGAGGGTAAAGGGTGTTTTGTGTTTGCTGATAAAGTTGGGAACTTTGGCGATGATGACTACGGTTGTGTACCTGAAAACCCGGTTATATTGTCGCTTGATTCAGATGGGGATAGTGAGAGGGAGGAACATGGCGTGGCTGGAAGTAGTTCAGATGATGATGGATATGTTTCTCTTTTATTTTCAACGGAGAGTGAGAATGGTGACACTAGTGATGAAGAATTTTGCGTTGATGATAATAGGAGTGAATACTCGAGTAGTGAGGACAATGATTCTAAGGATGATCATGAGAAGGGGGGATACAGAAAGATGGCGAAGGAGAGGGTGAGAAAGGTGGAGAGTGATACTGTAAGCAGTGGAGTTTGCAGAAGGAAAGGTGAAAGGAAAGATAATGAGCAGGTAGAGGAGGAGGTGGAGCAATGGATTGGTGCTGATTGTGCTAGTGCGACCTCTAGTAAATCCGAGATTTATAAGGAGGAAGCAAGGAATGCAGCACAGAAACATGAAACAAAGAGAGTAGAAAGTGTCAATGCTGATGCCAAAGTCTTTGGTGATCACTGGGAATGTTCAGGTTGCTCTAAGCCTTCTGAAGCTGAAGCACTAGAGGATAAGAAGAAAAGAGATAGAGGTTGTCAAAGTGTGTCATTGCACAAGGAGACAGGAGATTCAACTATGGTTAAGAAGAGTAAGAAAAATAACAAGGCCAATGCCGATGCCAATGCCAATATCAATGCCAATGCCAATAACTGTGTGAATCTTGTTGACCATGAAGGTAAAGAGCATCATCACGACAAAGGACCAGGTGTGAGGAGTGTTTCTTTTTTGCCAAAAATCCAAGCGAAGATAGGACATTTGGTTAAAGTTGTAATCGAAGAGGACGAGAAGGAAAAGGAGCATAAAGATGAGTTTAATAGCAATAATGGTGAGCTGAAGGTAAGGGTGGTGAATGATGAAATTGGTGATAAAGATGAGCTGCATGAATTCCTACGGATGCCATCTAGAACAAAGGACCAATGTCTTAAACTTTTTACTGAATGCTTTTGGGGCAAGCATGATTCTGTTAAAGATGATTCAAATGAGTTGGAAGAAAAGGATGATGATGTTGATCAGGGTCAGATTCAGCCGTTAGCTTCTAGGGAGACAGTCCCTTTGAATTGGAACTTTCAGAAGAAAGAACCTATTGAAAAATCAGAGTCTGAGAAGGAGTTAGATATGTTATGGTGTGAAATGGATATGTTGCTTCTCGTTGACGAAATTGGGTCCCAGGTTGGTAATACAGGGACAAATGAAGCTAGAGAAAACGAAGAAAGTCCAGCCTCCCATTGCAAACATGACACTATTTTTAACGAGGAGATTGGGATATATTGCAGATGGTGTGGTTGGGTTGCCACTGAGATCAAATATATCACGCCACCATTTGTAAGCACGATGGATTCTGAAAGATCTGGTAGAAGGGTGTCATCTGGTGGATGGGACACCTCACAATTTGATGGGGCACTGTTTAATGATTCTTGTGATGACTCAGAAGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATAAAACAAACCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTGTTTGGACAAATTTGGCAGGAACCACTGACCTTGCCATGTTGAAGAGGGTTGATCCGAATAGTGAAGGTGGGTGCATTATCTCTCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAGTTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTGCTAACATATTGCTTACTTGGGAAGATGAGTTGAGGAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATGCTGAATTATCAGGAAAAGAGCAAGCCATTAATGAAGTTGACTGGTCTGGCAATCAAAGGCAGAATAAGGATGCCATACGAATGGTGAAGTTGTGTTCATGGTACAAAGAGCGGAGCATTCTATTAATCAGCTACAATTTATATGAGAAGTTAGCAGGGGGCATGTGTGAACTTGATGAGGAAAAAGAGAAGAAAAATAGAAAGATGAAAAAAGAGAGGAAACGTGCAAGGACTAGGAAGTACATTGAAAGTGCAATGGGACAGGTTCTACGTGACTATCCTGGTTTGCTAGTTCTTGATGAAGGGCACACACCTCGGAATCACCAAAGCTGTATTTGGAAGGTTCTTTCTGAAAGTAGAACTCACAAGCGAATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTATGGAACTCTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGTCAAAGTAGACTAAGGCAGAAAAGGAAAGCTTCAAAAGATGTGAGTTGGGAATCCCTTTCTTCTGGAAATTTAGCTGATGAGAAAATAAACCACCTGAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAATCTTCCTGGGTTAAGAGATTGTGTGCTGGTTTTGAAGCCAGATAGTTTTCAGCAAGAAACTCTAGAGAGCATCGAATGTTCTCAAAACGTACTGAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAATTGCTCTCTGTCAAAAAAAGAAGAATCTGTTCTTGACAAGGATCAGTTGGAAAAGCTTAGATTGAAACCTTCTGGAGGGGTCAAAACCAAATTTTTGATGGAGTTAGTAAGATTATGTGATGCAGTTAATGAAAAAGTCCTTGTTTTTAGCCAATTCATTGATACCTTGTGCTTAATTAAGGACCAACTCAAGTCAGCCTTTAATTGGTCTGTGGGAACGGAAGTGTTGTTTTTGAATGGTAGTCTTGACCATAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATGAGAATAGCCAAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAGGGCATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTCTGGAATCCCTCAGTGGAAAGACAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACTGCAGAATGCACAAAATATTGTAAACAAGCAGAAAAGGACCGCTTGTCTGAACTGGTTTTCTCAAACAGAAATGCTGAAAGTGACAAGATCAAGAGTTGTGTTGTAAAGTTTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATGAAAACCTCAAGGACATGTTTGCTGAATGTCTGGTTCAGCCAAAGGACAGAGATTTGGAGACTTTGGGCCCCTAA 3726 0.4165 MYRWVPVACRTRSKEGRVIVSDLIMGRKRKRVDDDEVILLEENSGEGEGATGKIESGSGASSSSGAPALKRGRVSERGFECLGEHADYPIEIGDSDDDIEAEEGLIHCGNKRFEVNEEGRSEEGKGCFVFADKVGNFGDDDYGCVPENPVILSLDSDGDSEREEHGVAGSSSDDDGYVSLLFSTESENGDTSDEEFCVDDNRSEYSSSEDNDSKDDHEKGGYRKMAKERVRKVESDTVSSGVCRRKGERKDNEQVEEEVEQWIGADCASATSSKSEIYKEEARNAAQKHETKRVESVNADAKVFGDHWECSGCSKPSEAEALEDKKKRDRGCQSVSLHKETGDSTMVKKSKKNNKANADANANINANANNCVNLVDHEGKEHHHDKGPGVRSVSFLPKIQAKIGHLVKVVIEEDEKEKEHKDEFNSNNGELKVRVVNDEIGDKDELHEFLRMPSRTKDQCLKLFTECFWGKHDSVKDDSNELEEKDDDVDQGQIQPLASRETVPLNWNFQKKEPIEKSESEKELDMLWCEMDMLLLVDEIGSQVGNTGTNEARENEESPASHCKHDTIFNEEIGIYCRWCGWVATEIKYITPPFVSTMDSERSGRRVSSGGWDTSQFDGALFNDSCDDSEAVWSHNEGTVWDLIPDIKQTLYPHQQEGFEFVWTNLAGTTDLAMLKRVDPNSEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEQAINEVDWSGNQRQNKDAIRMVKLCSWYKERSILLISYNLYEKLAGGMCELDEEKEKKNRKMKKERKRARTRKYIESAMGQVLRDYPGLLVLDEGHTPRNHQSCIWKVLSESRTHKRILLSGTPFQNNFMELYNILCLMKPSFPDSIPQELKKFCQSRLRQKRKASKDVSWESLSSGNLADEKINHLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSFQQETLESIECSQNVLNFEHKLALVSVHPSLFLNCSLSKKEESVLDKDQLEKLRLKPSGGVKTKFLMELVRLCDAVNEKVLVFSQFIDTLCLIKDQLKSAFNWSVGTEVLFLNGSLDHKQKQSLIHSFNDENSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTAECTKYCKQAEKDRLSELVFSNRNAESDKIKSCVVKFEDRVLDLMVQHENLKDMFAECLVQPKDRDLETLGP 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5815g00001 1241 Coils Coil 805 825 - -
Mupr5815g00001 1241 CDD SF2_C_SNF 1036 1165 - -
Mupr5815g00001 1241 Gene3D - 627 942 IPR038718 -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 316 355 - -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 195 256 - -
Mupr5815g00001 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 840 1194 IPR027417 -
Mupr5815g00001 1241 Gene3D - 961 1234 IPR027417 -
Mupr5815g00001 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1042 1200 IPR001650 -
Mupr5815g00001 1241 Pfam Helicase conserved C-terminal domain 1042 1154 IPR001650 -
Mupr5815g00001 1241 SMART ultradead3 647 903 IPR014001 -
Mupr5815g00001 1241 SMART helicmild6 1069 1154 IPR001650 -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 318 355 - -
Mupr5815g00001 1241 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 187 1235 IPR044567 GO:0080188
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 156 170 - -
Mupr5815g00001 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 919 IPR027417 -
Mupr5815g00001 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 677 895 IPR014001 -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 40 71 - -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 148 256 - -
Mupr5815g00001 1241 MobiDBLite consensus disorder prediction 475 497 - -
Mupr5815g00001 1241 Pfam SNF2-related domain 667 982 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5815g00001 Mupr-Chr5815 2041 6399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5815g00001 1051 1198 RAD5 or RAD16-like Gene Family AT5G05130 39.597 3.36e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr5815g00001 SNF2_N 9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5815g00001 K10875 - gmx:100812737 1646.71