Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5813g00002 ATGAAGGTTTTTGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGAACACCCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCTCAGCAAATGCTAATTCATCAAGGGAAAGTTCTAAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAACACATCTAGTGAAGGATCTACTACTTCAACTACACCATCAACCAAGGCCCCACAGACAAGTACAGCTCCTACTTCAGCCCCACCTGTGTCAGCAGCACCGCCTGCATCTGTTACTGTACCTGTATCTTCGCCTTCTCCAGCTCCAGCTCCAGCTGCAGCTGCAGCTCCAGCTCCAGCTCCTGCTCCTGCTCCTCTATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCCGAGCAAGCTGAAGCTCCACTTGTTGCTCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTCCTCCTGCTGCTGCTCCACAAGCAGTACAACCTGCTCCAGTTACTTCAAGTGGACCTAACGCCAATCCTTTAGACCTTTTTCCCCAGGGCCTCCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCTCGTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCTCAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCGGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAACGTATTGGGGCAGCTGGCTGCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTCGAGGAACAATAG 1209 0.4806 MKVFVKTLKGTHFEIEVNTQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKNTSSEGSTTSTTPSTKAPQTSTAPTSAPPVSAAPPASVTVPVSSPSPAPAPAAAAAPAPAPAPAPLSSGTAVEGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARVPASAQPANPPPAAAPQAVQPAPVTSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNVLGQLAAGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5813g00002 402 MobiDBLite consensus disorder prediction 225 248 - -
Mupr5813g00002 402 Gene3D - 162 212 - -
Mupr5813g00002 402 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Mupr5813g00002 402 CDD UBA1_Rad23_plant 163 212 - -
Mupr5813g00002 402 Gene3D - 349 396 - -
Mupr5813g00002 402 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mupr5813g00002 402 Gene3D - 1 80 - -
Mupr5813g00002 402 MobiDBLite consensus disorder prediction 106 142 - -
Mupr5813g00002 402 SMART CBM 274 317 IPR006636 -
Mupr5813g00002 402 MobiDBLite consensus disorder prediction 79 105 - -
Mupr5813g00002 402 CDD Ubl_Rad23 1 74 - -
Mupr5813g00002 402 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mupr5813g00002 402 FunFam UV excision repair protein RAD23 1 80 - -
Mupr5813g00002 402 SUPERFAMILY UBA-like 166 218 IPR009060 GO:0005515
Mupr5813g00002 402 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00002 402 FunFam UV excision repair protein RAD23 homolog 162 212 - -
Mupr5813g00002 402 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Mupr5813g00002 402 MobiDBLite consensus disorder prediction 79 148 - -
Mupr5813g00002 402 Pfam UBA/TS-N domain 357 392 IPR015940 -
Mupr5813g00002 402 Pfam UBA/TS-N domain 169 207 IPR015940 -
Mupr5813g00002 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Mupr5813g00002 402 SUPERFAMILY UBA-like 338 399 IPR009060 GO:0005515
Mupr5813g00002 402 SUPERFAMILY XPC-binding domain 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00002 402 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 167 210 IPR015940 -
Mupr5813g00002 402 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Mupr5813g00002 402 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Mupr5813g00002 402 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Mupr5813g00002 402 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Mupr5813g00002 402 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Mupr5813g00002 402 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Mupr5813g00002 402 SMART ubq_7 1 75 IPR000626 GO:0005515
Mupr5813g00002 402 SMART uba_6 169 209 IPR015940 -
Mupr5813g00002 402 SMART uba_6 357 394 IPR015940 -
Mupr5813g00002 402 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00002 402 FunFam UV excision repair protein RAD23 B 267 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5813g00002 Mupr-Chr5813 13387 17249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5813g00002 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 9.36e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5813g00002 K10839 - gmx:100814162 602.053