Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5813g00001 ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGAACACCCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAAATGTCTATCCTGCTGCTCAGCAAATGCTAATTCATCAAGGGAAAGTTCTAAAGGATGCTACTACCTTGGAGGAGAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAGAACACATCTACTGAAGGATCCACTACTTCAACTGCACCATCAACCAAGGCCCCACAGACAAGTACAGTTCCTACTTCAACCCCACCAGTGTCAGCAGCGCCTCAAGTTCCTGCTGCAACTGGGGCACCGCCTGCATCTGTTACTGTACCTGTATCTTCACCTTCTCCAACTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTATATCTTCAGGAACTGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGAAACCATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATTCAGGTATCCCTGAGCAAGCTGAAGCTCCACTTGTTGCTCGAGTGCCTGCAAGTGCTCAACCTGCAAATCCTCCTGCTGCTGCTGCTCCACAAGCAGCACAACCTGCTCCAGTTACTTCAAGTGGACCTAACGCCAATCCTTTAGACCTTTTCCCCCAGGGCCTCCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCTCATTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCTCAAATATTGCAGCCCATGCTACAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCGAGATCATCAAGCGGACTTCCTTCGCCTGATAAACGAACCTGTCGAAGGCGGCGAAGGGAACGTATTGGGGCAGCTGGCTGCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTGTTGGAGGTGTACTTCGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG 1218 0.4811 MKVFVKTLKGTHFEIEVNTQDTVSEVKKNIETVQGANVYPAAQQMLIHQGKVLKDATTLEENKVAENSFIVIMLSKSKNTSTEGSTTSTAPSTKAPQTSTVPTSTPPVSAAPQVPAATGAPPASVTVPVSSPSPTPAPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPLVARVPASAQPANPPAAAAPQAAQPAPVTSSGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNVLGQLAAGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5813g00001 405 Gene3D - 270 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00001 405 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Mupr5813g00001 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 357 398 IPR015940 -
Mupr5813g00001 405 SUPERFAMILY UBA-like 169 221 IPR009060 GO:0005515
Mupr5813g00001 405 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mupr5813g00001 405 CDD UBA1_Rad23_plant 166 215 - -
Mupr5813g00001 405 SUPERFAMILY XPC-binding domain 276 341 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00001 405 NCBIfam UV excision repair protein Rad23 1 403 IPR004806 GO:0006289
Mupr5813g00001 405 SUPERFAMILY UBA-like 341 402 IPR009060 GO:0005515
Mupr5813g00001 405 PRINTS DNA repair protein Rad23 signature 354 370 IPR004806 GO:0006289
Mupr5813g00001 405 PRINTS DNA repair protein Rad23 signature 386 401 IPR004806 GO:0006289
Mupr5813g00001 405 PRINTS DNA repair protein Rad23 signature 305 327 IPR004806 GO:0006289
Mupr5813g00001 405 PRINTS DNA repair protein Rad23 signature 371 385 IPR004806 GO:0006289
Mupr5813g00001 405 MobiDBLite consensus disorder prediction 78 111 - -
Mupr5813g00001 405 Pfam XPC-binding domain 279 334 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mupr5813g00001 405 CDD Ubl_Rad23 1 74 - -
Mupr5813g00001 405 Gene3D - 352 399 - -
Mupr5813g00001 405 SMART CBM 277 320 IPR006636 -
Mupr5813g00001 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 170 213 IPR015940 -
Mupr5813g00001 405 FunFam UV excision repair protein RAD23 homolog 165 215 - -
Mupr5813g00001 405 SMART uba_6 360 397 IPR015940 -
Mupr5813g00001 405 SMART uba_6 172 212 IPR015940 -
Mupr5813g00001 405 MobiDBLite consensus disorder prediction 78 149 - -
Mupr5813g00001 405 Pfam UBA/TS-N domain 172 210 IPR015940 -
Mupr5813g00001 405 Pfam UBA/TS-N domain 360 395 IPR015940 -
Mupr5813g00001 405 Gene3D - 165 215 - -
Mupr5813g00001 405 MobiDBLite consensus disorder prediction 230 257 - -
Mupr5813g00001 405 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 393 - -
Mupr5813g00001 405 FunFam UV excision repair protein RAD23 1 80 - -
Mupr5813g00001 405 Gene3D - 1 80 - -
Mupr5813g00001 405 MobiDBLite consensus disorder prediction 127 145 - -
Mupr5813g00001 405 FunFam UV excision repair protein RAD23 B 270 335 - -
Mupr5813g00001 405 FunFam UV excision repair protein RAD23 homolog 351 399 - -
Mupr5813g00001 405 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mupr5813g00001 405 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5813g00001 Mupr-Chr5813 1064 5070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5813g00001 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.02e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5813g00001 K10839 - gmx:100814162 630.943