Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5812g00021 ATGGCGGAAGCTTCGAGAATGATGTTGTACTCCAGTCTCGTTCCTTGTTTTAGCCTCAGAAGGCACGTGAGTCAGCGTCAGCTAAGAAGCGTGTCACGCAAGCAGCAAATTGAGTGCTCGGCGTCTGCAGGTGGCACGGTGGCCTGGGGCTGCGAGATTGAGTCGTTAGAGAACGCGTCAGCTTTGCAGAGGTGGCTCTCAGACTCAGGGCTCCCACCACAGAAGATGCGCATAGAGAGAGTGGATGTGGGAGAGAGAGGACTCGTTGCTTCCAAGAACATTAGGAAAGGGGAGAAGCTTCTGTTTGTGCCTCCCTCCCTCGTCATAACTCCGCTTTCTGAGTGGAGCTGCCCAGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCGAGATGGAGCAATTATATATCAGCCTTGCCTCGACAACCTTACTCGCTTCTTTACTGGTCGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCACAAATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCTAAATACCCCGATTTATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTGTTCTCCCGCTTGGTTCGGTTACCCTCAATGGATGGAAATGTTGCCTTGGTTCCTTGGGCTGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGACATCAAAGGGAATTGTCTTCACGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTTTGTTATCTTATGGATTTGTTCCAAAGGAAGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCACTGTCACTGAAGAAATCTGATGAGTCCTACAAGGAGAAGTTAGAATTGTTGAAGAAGTATGGATTATCAGTATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGGAGAATTTGAAGAGATGGCTGCTGCAGCATCAAGTAGTACCACCTCCAAGAAAGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAGTTCATACTTGATAGCTGCGAATCCAGCATATCAAAATACAACAATGGATCACTGGATTTGGATGTGACTTCTCCTAAACAACTCAACCGAAGGCTCTTTCTGAAACAGCTAGCCATGGACTTGTGTACTAGCGAGCGAAGAATACTATTTCGTGCTCAATACATACTGCGGAGAAAACTAAGGGACATGAGGGCTGGTGAATTAAGGGCCCTAAAAATGTATATGTAA 1434 0.4407 MAEASRMMLYSSLVPCFSLRRHVSQRQLRSVSRKQQIECSASAGGTVAWGCEIESLENASALQRWLSDSGLPPQKMRIERVDVGERGLVASKNIRKGEKLLFVPPSLVITPLSEWSCPEAGEVLKKNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMDGNVALVPWADMLNHSCDVETFLDYDKTSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDESYKEKLELLKKYGLSVSQCFPIQITGWPLELMAYAYLAVSPSSMRGEFEEMAAAASSSTTSKKDLRYPEIEEQALQFILDSCESSISKYNNGSLDLDVTSPKQLNRRLFLKQLAMDLCTSERRILFRAQYILRRKLRDMRAGELRALKMYM 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5812g00021 477 CDD SET_RBCMT 73 304 IPR044431 GO:0016279|GO:0018022
Mupr5812g00021 477 Pfam SET domain 86 290 IPR001214 GO:0005515
Mupr5812g00021 477 SMART set_7 74 296 IPR001214 GO:0005515
Mupr5812g00021 477 PIRSF RMT_SET 1 477 IPR011192 GO:0009507|GO:0030785
Mupr5812g00021 477 ProSiteProfiles SET domain profile. 74 290 IPR001214 GO:0005515
Mupr5812g00021 477 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 57 423 - -
Mupr5812g00021 477 Pfam Rubisco LSMT substrate-binding 323 451 IPR015353 -
Mupr5812g00021 477 FunFam Rubisco methyltransferase family protein 309 467 - -
Mupr5812g00021 477 Gene3D set domain protein methyltransferase, domain 1 17 303 - -
Mupr5812g00021 477 SUPERFAMILY SET domain 58 307 IPR046341 -
Mupr5812g00021 477 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 320 469 IPR036464 -
Mupr5812g00021 477 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 41 303 - -
Mupr5812g00021 477 Gene3D - 309 470 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5812g00021 Mupr-Chr5812 49662 60353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5812g00021 61 259 NAC Transcription Factor Family AT3G56570 22.886 1.83e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mupr5812g00021 SET 7.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5812g00021 - - gmx:100803319 801.971