Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr579g00005 TTTATGGAGATTAAGGGTTTTATGTTCAACCAACAACAGGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTATCCTCAACAATACTTGGCTCCACCACCAACTCAGACTCAACCAGCAAAGAAAAAGAGAAACCTCCCTGGCAACCCAGACCCTGATGCTGAGGTTATAGCCTTGTCCCCCAAGAGTCTTCTTGCCACAAACAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAACGAGATCAGAACCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAACCCACTTGTGTGCATCATGACCCATCAAGGGCCCTGGGGGACCTAACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAAGCCCACTCCAAGACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCCTTAGCAGAGGAGAGTGCAAGAGCCATGACAGGCACAGGCAACCCACAACCTTGTTCTTCTCAGCACCACCACATAAGCCTCCAAACCCAATTCAACCCCCAAGAAATCCATGCCTTCCCAATGAAAAGAGAGCAACTAAGTTTCAATGGTAGGCCAGAAATAATACCCCCTTGGCTTGGCCCACCAACAACAGTGGATCATCTCTCCTCACCCTCATCCATAATCTTCTCTCCTCCTCCACACCAAGAAAACCCTAACCCTAGCCTTGGCCCCACTCTTGCTGCCTACCAAACAGTCTCCCCACACATGTCAGCTACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAATGCTTCCTCACCAGCCATGACAAGGGCCCACCATCAGGTTCACGTGTCTTCTTCTGCTGATTCTGCCACTGCTCACTTTGGCTTGAACTTGTCCTCACGTGAAGACACCACCACCACCACTACTACTTCAACAACAACTCCTACTACTAACACTGCTACAGTGTTTAGCCATGGCCATGGCTTATTACTAACATCACCTTTGGGGAATAAAGCTGCTACTACTGTGTCTTCTTCTGCTGCTCCATCCCTTCTTCATGATGTTATCAACTCTTTCTCTTCCCCTTCTGCCTTTGAAGGAACCCCTTTTGAGGACGCCTTTGGTGGCATTCAGAATTCAAAGAAACTAGACGACGATGATGATAACTTGTATTTGCATGACACCTTCTCGAAAACAAGCGCTGCTGGAAATGAAGGGTTGACCAGAGATTTCTTGGGGCTTAGGCCTCTCTCTCATACTGATATTCTCACCATTGCTGGCATTGGAAATTGCATCCATGATCAACAAAACCAATCTCAAAAGCCATGGCAAGGTTAG 1542 0.4747 FMEIKGFMFNQQQVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPTQTQPAKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTGTGNPQPCSSQHHHISLQTQFNPQEIHAFPMKREQLSFNGRPEIIPPWLGPPTTVDHLSSPSSIIFSPPPHQENPNPSLGPTLAAYQTVSPHMSATALLQKAAQMGATMSRNASSPAMTRAHHQVHVSSSADSATAHFGLNLSSREDTTTTTTTSTTTPTTNTATVFSHGHGLLLTSPLGNKAATTVSSSAAPSLLHDVINSFSSPSAFEGTPFEDAFGGIQNSKKLDDDDDNLYLHDTFSKTSAAGNEGLTRDFLGLRPLSHTDILTIAGIGNCIHDQQNQSQKPWQG 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr579g00005 513 Gene3D Classic Zinc Finger 142 222 - -
Mupr579g00005 513 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Mupr579g00005 513 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Mupr579g00005 513 MobiDBLite consensus disorder prediction 20 72 - -
Mupr579g00005 513 FunFam protein indeterminate-domain 12-like 67 135 - -
Mupr579g00005 513 SMART c2h2final6 164 184 IPR013087 -
Mupr579g00005 513 SMART c2h2final6 88 110 IPR013087 -
Mupr579g00005 513 SMART c2h2final6 129 159 IPR013087 -
Mupr579g00005 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Mupr579g00005 513 MobiDBLite consensus disorder prediction 364 387 - -
Mupr579g00005 513 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Mupr579g00005 513 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 489 IPR031140 -
Mupr579g00005 513 MobiDBLite consensus disorder prediction 20 61 - -
Mupr579g00005 513 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Mupr579g00005 513 Gene3D Classic Zinc Finger 69 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr579g00005 Mupr-Chr579 46581 48678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr579g00005 15 334 IDZ Gene Family AT1G55110 61.224 3.41e-127 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr579g00005 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr579g00005 K25870 - gmx:100808344 772.696