LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr578g00002	ATGGTTAGAGGTGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCAATTGTTCTAAACTCTTTCCCTGAAGACACAAATTTAAACCACCCCAAGTGGAAACTTCATCCCCACAACAACATGGACGACGCTACAGTCACCAACAAAGCCTCTTCTTCTTCTTCACCCTCCAATATCCCCTTCCAAGTCAACTTTAGCTCTTCCTCCAACAACCATCCCTCTTCCCCACCTTCTCACATCAACAGAACCGAGGTGGACTTCTTCTCCGACAAGAGCAACATCAAAGATCAAAACGTTGCCGCCTCTTCCTCTGCCTCTCTCCCTGACAATCTTCTTCGTTCCACCATTCCGTCTACGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTACCAATACTAGCAGCGATCAATCTATGGTGGATGATGACACATCACCCAATTCAGAAGACAAAAGAGCTAAGAATGAGCTGGTTGTTGTTCAAGCTGAGCTGGAGAGAATGAAGAGAGAGAATCAGAAGTTGAGGGACATGCTGGATCAGGTTAACACCGATTACAGCGCTCTTCAGATACATTTTATGAATTTGATGCAGGAGCAGAAGGCTGAGGAGATTGAAGAGCAAGAAGTGTTGGGTGGAAGGTTAGAAGAGAAGAAGCAAGGTGAGAGTAGTGGGGTGTTGGTGCCAAGGCAGTTTATGGATCTTGGGTTGGCTACTAATGCTGACACTGATGAACCCTCTTCTTCATCAGGAGGAAGGAGTCAAGATAGGTCAGGATCACCTGGGAATAATACCATAGAAGTGGGTTCCAAGGAAGTAGGGACTAGTAAGAATAATGCTAATGATGAAGTGGTTGTGTATGATCAAGAGAAGAAGGGATATGGTAGGGGAGTTGAAAGAGAGGATAGTCCCTCGGGTCATGCTTTTGCTGGTGGTGATAATAAAATTCCAAGGCTCAGTCCTCCAAAGAACACTGTTGATCAGGCTGAGGCCACCATGAGGAAGGCAAGAGTTTCGGTTAGAGCTAGATCAGAGGCACCCATGATTAGTGATGGGTGTCAGTGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGTCCAGTTAGAAAGCAGGTACAAAGGTGTGCTGAAGACCGAACAGTTCTTATCACAACCTATGAAGGCAATCACAACCACCCTTTACCTCCAGCAGCTATGTCAATGGCCCAAACTACTTCCTCAGCAGCAAGGATGCTGCTTTCAGGGTCAATGTCAAGTGCTGACAGTCTAATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCTTCAAACATGGCAACAATCTCAGCATCTGCTCCCTTCCCAACTGTTACATTGGACCTAACTCAAACTCCAAACCCTCTACAGCTCCCAAGGCATCCAAGCCAGTTACAAATCCCCCTCCAAGGTGTCCCTCAGAACTTTGCAAACTCCCCAGCATCTCTAATGCCTCAGATATTTGGCCAGGCCCTTTACAACCAATCAAAGTTCTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAGTTTGTTAATCACCCTCAGCAGGTTCCACCACAACTTGCTGACACAGTTGGTGCTGCCATTGCTGCTGACCCAAACTTCACTGCAGCTTTGGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACAGCAACATAATAATAATAATAACAATAATAATGGCAACGTGACGGCCACAAACAGCAATGGCAATGCTACGAGTAGCAGCAACAACAATAGCAACGCAAGGCAATAA	1857	0.462	MVRGGGGLSMDSDPIGSFFLHKPIVLNSFPEDTNLNHPKWKLHPHNNMDDATVTNKASSSSSPSNIPFQVNFSSSSNNHPSSPPSHINRTEVDFFSDKSNIKDQNVAASSSASLPDNLLRSTIPSTLEFKVNTGLNLLTTNTSSDQSMVDDDTSPNSEDKRAKNELVVVQAELERMKRENQKLRDMLDQVNTDYSALQIHFMNLMQEQKAEEIEEQEVLGGRLEEKKQGESSGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPGNNTIEVGSKEVGTSKNNANDEVVVYDQEKKGYGRGVEREDSPSGHAFAGGDNKIPRLSPPKNTVDQAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMSMAQTTSSAARMLLSGSMSSADSLMNANFLTRTLLPCSSNMATISASAPFPTVTLDLTQTPNPLQLPRHPSQLQIPLQGVPQNFANSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFVNHPQQVPPQLADTVGAAIAADPNFTAALAAAITSIIGGAQQQHNNNNNNNNGNVTATNSNGNATSSSNNNSNARQ	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr578g00002	618	SUPERFAMILY	WRKY DNA-binding domain	350	418	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mupr578g00002	618	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	140	598	IPR044810	GO:0003700
	Mupr578g00002	618	Gene3D	WRKY domain	342	419	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mupr578g00002	618	ProSiteProfiles	WRKY domain profile.	352	418	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mupr578g00002	618	FunFam	probable WRKY transcription factor 31	342	419	-	-
	Mupr578g00002	618	SMART	WRKY_cls	357	417	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	249	288	-	-
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	46	89	-	-
	Mupr578g00002	618	Coils	Coil	159	193	-	-
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	585	618	-	-
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	302	331	-	-
	Mupr578g00002	618	Pfam	WRKY DNA -binding domain	359	416	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	48	89	-	-
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	139	160	-	-
	Mupr578g00002	618	MobiDBLite	consensus disorder prediction	247	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr578g00002	Mupr-Chr578	17644	20732	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr578g00002	91	593	WRKY Transcription Factor Family	AT1G62300	50.766	1.24e-137	411

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mupr578g00002		WRKY	3.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr578g00002	-		-	gmx:100797998	748.043