Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5784g00003 ATGTATAGGGTTCACTCTCAAATCCTTCACAGCAATGGTGCCATCACCAATCCCCCTCTTCTTTCTCCATATTCTTCTTCATACACTTCTTCTTCGTATTCCCCCTCAGTGCCTTATGTTTCTAACTACAAGGCACAATCAGCTCCATCTCCAACTTCTTCATCTGGGAATAGAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTGGCTGTGGTATTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTCTGAATCAGATACTTACCAGAGGCAGTTGCAGCAGCTCTTCCATCTCCATGATTCAGGTCTCGATCAGGCTTTCATAGATGCTCTCCCAGTCTTCTTTTACAAAGAGATAATAGGCTTGAAGGAGCCATTTGATTGTGCTGTTTGCCTATGTGAGTTCTTGGAACAAGACAAGCTGAGATTGCTTCCCATGTGTAACCATGCTTTTCACATTGAGTGCATAGACACATGGCTGCTGTCTAATTCAACCTGTCCTCTCTGTAGAGGGACTCTCTATTCACCAGGCTTTGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGGGGTGTCAGGCAGTGGTGGAGGTGGGGTTGGGGTTGGGGTTGGGGTTGGTTCTGTTAACAAAACTGTAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTTAGAAGCACTAATAATGAGGTGGAGAGAAGTGAAGGAGAGAGTAGTAGTGGTAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTTTAGGCCCTGGTAGAGGTGATGGAGGAGGCAGTGGCAGTATGAGACAACTGAAGGGAAGAGCAGCTCCAAATGGGAGTTTTTTCATTGATGGGGATGCTGAGGGCAAGAAAATCAACATTGCAAGGAAAGGTGATAGCTTTTCTGTCTCCAAGATCTGGCAATGGTCTAAGAAAGATAAGTTGACAGGTTCATCAGATGCTCATTTCCATAATTCTACTGCCACTTCAACTTTGCCATGGATGAATAAAGCCAGAGAACTTGTAGATTATGCCATATAA 1182 0.4298 MYRVHSQILHSNGAITNPPLLSPYSSSYTSSSYSPSVPYVSNYKAQSAPSPTSSSGNRISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDTYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPMCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENSAFDFESQLEEDGVSGSGGGGVGVGVGVGSVNKTVESHIVNGKRVFSVRLGKFRSTNNEVERSEGESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPGRGDGGGSGSMRQLKGRAAPNGSFFIDGDAEGKKINIARKGDSFSVSKIWQWSKKDKLTGSSDAHFHNSTATSTLPWMNKARELVDYAI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5784g00003 393 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Mupr5784g00003 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 354 - -
Mupr5784g00003 393 FunFam RING-H2 finger protein ATL46 114 199 - -
Mupr5784g00003 393 CDD RING-H2_EL5-like 151 194 - -
Mupr5784g00003 393 SUPERFAMILY RING/U-box 131 200 - -
Mupr5784g00003 393 SMART ring_2 152 193 IPR001841 -
Mupr5784g00003 393 Pfam Ring finger domain 151 194 IPR001841 -
Mupr5784g00003 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 199 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5784g00003 Mupr-Chr5784 4362 5743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5784g00003 78 366 C3H Transcription Factor Family AT2G18650 40.635 3.16e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5784g00003 - - gmx:100805154 581.252