Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5782g00002 ATGAAGTTCTGCAAGACCTACCAGCAATATATGCAAGAACAGGGGCAGCAGCTCCCTGGGGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAAAGTGCAGGAGATCTTCCTTATCCCATCTTCAACCCACCTGCCCTGACCATTGTCCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCACTGAAATGTCAGATATTGTAGGATGCTTTAACCAGCGAGCGCAGGTATTGCTGGAACAACATCTTGCTTCTGGCTTCAGGAAGTACTTTCTCATGTTGAAAGGAATGTTACGGGGTAATCATACTGCTCTAATTCAAGAAGGCAAAGATCTAGTCACTTATGCACTCATAAATTCCATTGCAATTCGAAAAATATTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAGTTATTCAGGTCCAAAGTCCAGACCATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTTGTGAGCTTATTGCCTTACACCTCAACTTAAGGGAAACCAGAGTTGGGTCGAGGGAGGCACCTTCACTGTTTGATGGATGTTATCTCACTTTCGATGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCATCAAAATTGATATGTACTTGACTTGCTCTGTATGCTTGGATACAGTGTTTGATCCAGTTTCCCTGACTTGCGGTCACATATTCTGCTATACATGTGCTTGCTCAGCTGCATCGGTAACTATTGTCGATGGACTTAAGGAAGCGGACCCTAAAGAAAAATGTCCCCTATGCCGAGTGGGAAGAGTTTATGAAGATGCTGTACACTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCCCGGAGTACTGGGAGAAAAGGCTTCAGATGGAGAGGGTAGAGAGGCTTAGACAAGTGAAGGAGCATTGGGAAATGCAGTGCAGGGTCTTCATGGGCATCTAG 954 0.4413 MKFCKTYQQYMQEQGQQLPGVGFKKLKKIMKKCRRSSLSHLQPTCPDHCPVCDGTFFPSLLTEMSDIVGCFNQRAQVLLEQHLASGFRKYFLMLKGMLRGNHTALIQEGKDLVTYALINSIAIRKILKKYDKIHYSKQGQLFRSKVQTMHKEILQSPWLCELIALHLNLRETRVGSREAPSLFDGCYLTFDDGKPSLTCELFDSIKIDMYLTCSVCLDTVFDPVSLTCGHIFCYTCACSAASVTIVDGLKEADPKEKCPLCRVGRVYEDAVHLEELNILLGRSCPEYWEKRLQMERVERLRQVKEHWEMQCRVFMGI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5782g00002 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Mupr5782g00002 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Mupr5782g00002 317 Pfam Zinc finger, C3HC4 type (RING finger) 212 262 - -
Mupr5782g00002 317 CDD RING-HC_BAH1-like 203 276 - -
Mupr5782g00002 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 315 IPR013083 -
Mupr5782g00002 317 SMART ring_2 213 261 IPR001841 -
Mupr5782g00002 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 IPR033326 -
Mupr5782g00002 317 SUPERFAMILY RING/U-box 206 264 - -
Mupr5782g00002 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5782g00002 Mupr-Chr5782 7080 9051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5782g00002 211 262 C3H Transcription Factor Family AT4G28270 38.596 5.16e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5782g00002 K16275 - gmx:100803060 555.058