Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5701g00002 ATGGGTCGTCCAAAATTAATTTTGAAACCCATTTCAAATAGGAGAGAACGTGATTTGGCTTTCATGAAGAGAAAGAAGGCACTAATGAAGAAGATGTCTGAATTTTCTACCGTGTGTGGAGTCAAAGCTTGCTTAATTATGTATGATGGCAATGGTGATGCTCCACCATTGACTTGGCCCCAAGACCCCAATGAGGTGCACTCCATCATCGAAAGGTATGAAGGTGTAAAGAATGAGAAACTTCCTAAGAACTTTGATCTCAATAACTTTTTTGAGAATAAGAAGAATATGGTTGAAGGTGAGATTTCCAAAGTTCAAAAAGAGACCCTCAAGATCAAATATCCAACTTGGCATCCATGTTTCAACAACCTAGGTATAGAGGAGTTGAGGAATTTCATGGCTAGGTTGGACATTAAGCTTGAAACTTGTAATCGTCAACGAATGAAAATGTTACGCAAGCATCAAATTGAAGCAGCCAACTTCAATCTTATGCAATGCATGGTTCAATCGGAGAGTGCTGGCCCAAACCCAACCCAACTCAATTTCATGCAGAACATCTCTCAAAATCAACTTATCCTTGCTCCTCCTATGATGCCACTTAATGATGGTAACTTAGTAACATCTTACCTACTTAATCTTGATAGAGGTTCTAGTTCTCAATCCCAAATTCTTAATAGAGGTTCTAGTTCTCAATCTCATATTCCTGATAGAGGTTCTAGTTCTCAATCCCAAATTCTTGATAAATGTTCTAGTTCTCAATCCCAAATTCTTGATAAAGGTTCTAGTTCTCAATACCAAATGCTTAACTTTGATCCAAATCTTATGCAATTGAGGGAAAAAAATAAAGGAGTGGTGCATATTACTAATCATGTTGATGTGCCTCTGGATTGTACAAACCAAATTCATGCTTTTGAAAATTCTACAAATCAACTTGATGTGCCTCTGGATTGTGCAAACCAAATTGGGGCTTTTGAAAATTCTACAAATCAACTTGATGTGCCTCTGGATTGTGCAAACCAAATTGAGACTTTTGGAAATTCTACAAATCAACTTGATATGCCTATAGATTTGACTACTGCACTTGATGAGTGTTTGGACTATTTTAGTCAACTATGTGAAATTGAAGATTTGACAGGTCAATTTGATGAGGTTGTGAATTGGACTAGCCAACCTGATGAGTCTATAAATTGGCTCAATCAACATAGTGTGCCAGTGATTGGGGGAAGTACTAAAGCAATGAATGGTGCTACTAATTATGATACAAATTTTCATGGATATGAAAATAATCCAGAGTCCTCACTTTGCAATTACAATGGAGGTATCCAATCAATGCAATCCTATAACTATAATGTTGCATATGAGAATATTGCTTCTCAGTCTCAGAATGTGACCCTTCCACCACCAGTAGATGGATTTCAGACAAATCACTACAACATGCTTCAAAATCCGTCATTAAACCAAATCATCTAG 1470 0.3694 MGRPKLILKPISNRRERDLAFMKRKKALMKKMSEFSTVCGVKACLIMYDGNGDAPPLTWPQDPNEVHSIIERYEGVKNEKLPKNFDLNNFFENKKNMVEGEISKVQKETLKIKYPTWHPCFNNLGIEELRNFMARLDIKLETCNRQRMKMLRKHQIEAANFNLMQCMVQSESAGPNPTQLNFMQNISQNQLILAPPMMPLNDGNLVTSYLLNLDRGSSSQSQILNRGSSSQSHIPDRGSSSQSQILDKCSSSQSQILDKGSSSQYQMLNFDPNLMQLREKNKGVVHITNHVDVPLDCTNQIHAFENSTNQLDVPLDCANQIGAFENSTNQLDVPLDCANQIETFGNSTNQLDMPIDLTTALDECLDYFSQLCEIEDLTGQFDEVVNWTSQPDESINWLNQHSVPVIGGSTKAMNGATNYDTNFHGYENNPESSLCNYNGGIQSMQSYNYNVAYENIASQSQNVTLPPPVDGFQTNHYNMLQNPSLNQII 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5701g00002 489 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr5701g00002 489 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr5701g00002 489 MobiDBLite consensus disorder prediction 220 245 - -
Mupr5701g00002 489 PANTHER MADS BOX PROTEIN 5 143 - -
Mupr5701g00002 489 SUPERFAMILY SRF-like 1 84 IPR036879 GO:0003677|GO:0046983
Mupr5701g00002 489 Coils Coil 88 108 - -
Mupr5701g00002 489 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mupr5701g00002 489 Coils Coil 126 146 - -
Mupr5701g00002 489 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mupr5701g00002 489 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5701g00002 Mupr-Chr5701 1430 2899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5701g00002 1 145 Type I MADS-box Gene Family AT5G55690 34.437 1.38e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr5701g00002 SRF-TF 4.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5701g00002 - - ccaj:109791338 466.463