Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5692g00001 GTTTCTACTGTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTGTGGAAGTTACATCTCGTGGTGGGATTGAAAAGGTGATTGCTGATCGTAAGTGGAAGGAGGTGGTTCTGACCTTCAATTTCAAAGATACCATAACTAGTGCATCATTTATGGTGCGCAAATCCTACTTATCGATGCTTTATCACTTTGAGCAAGTGTATTATTTTGGGAGGCAAGGCATTCCTCCCCCAACACCCGATCTTATGGTTAGAGGCCAATCAAGCCATCCCTACACAACCATTCCGGAAGTTGCCGCTGTGAATGATTCCCCTGTTCAGGGTAGTCAAGTCCAGGCATATGATGCTATGCTTTCTGGAACAATTGATCTGAAATTTGATGGTGGATATGTAGTTACAATGACTCTGGGTTCTGAGCAGCTGAAAGGTGTCCTGTTTCATGTTGCTAACAACATGTCCCAGACATCCAATACCGAAGGCACTTCTAGTTCACAGAATCATGGTGAAGGCATGTCTAGTTCGCAGAGTCGAAAGAGAGCAAAATATGCCCCACGCGATCCATTTCGGCCAAAGTCAAACAGGAGTGGTTACAACTTTTTCTTTGCTGAGAATTATGCCAGGCTGAAACCCTCTTATCATGGGCAAGAGAGAGCAATTAGCAAGAAAATTGGGTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAGAAAGGGGTGAGAGATAAGGAAAGGTACCGGACTGAACTGATGGAGTACAAATCCAATAATTCAACTCCAAATGCTCAATAG 801 0.437 VSTVGGKSLDLHRLFVEVTSRGGIEKVIADRKWKEVVLTFNFKDTITSASFMVRKSYLSMLYHFEQVYYFGRQGIPPPTPDLMVRGQSSHPYTTIPEVAAVNDSPVQGSQVQAYDAMLSGTIDLKFDGGYVVTMTLGSEQLKGVLFHVANNMSQTSNTEGTSSSQNHGEGMSSSQSRKRAKYAPRDPFRPKSNRSGYNFFFAENYARLKPSYHGQERAISKKIGFLWNNLSEAERQVYQEKGVRDKERYRTELMEYKSNNSTPNAQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5692g00001 266 ProSiteProfiles ARID domain profile. 1 69 IPR001606 GO:0003677
Mupr5692g00001 266 SUPERFAMILY ARID-like 3 78 IPR036431 GO:0003677
Mupr5692g00001 266 SMART ARID_2 1 65 - -
Mupr5692g00001 266 Pfam HMG (high mobility group) box 190 257 IPR009071 -
Mupr5692g00001 266 Gene3D - 1 74 IPR036431 GO:0003677
Mupr5692g00001 266 Pfam ARID/BRIGHT DNA binding domain 4 65 IPR001606 GO:0003677
Mupr5692g00001 266 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 263 - -
Mupr5692g00001 266 SMART bright_3 2 70 IPR001606 GO:0003677
Mupr5692g00001 266 MobiDBLite consensus disorder prediction 154 178 - -
Mupr5692g00001 266 Gene3D High mobility group box domain 172 265 IPR036910 -
Mupr5692g00001 266 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 190 257 IPR009071 -
Mupr5692g00001 266 SMART hmgende2 189 258 IPR009071 -
Mupr5692g00001 266 MobiDBLite consensus disorder prediction 154 191 - -
Mupr5692g00001 266 CDD HMG-box_AtHMGB9-like 190 256 - -
Mupr5692g00001 266 SUPERFAMILY HMG-box 189 260 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5692g00001 Mupr-Chr5692 3 4300 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5692g00001 1 262 ARID Transcription Factor Family AT3G13350 52.075 3.63e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mupr5692g00001 HMG_box 7.1e-11 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5692g00001 - - gmx:100793029 479.944