Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5662g00001 TTACCATGTTACTTTTTCATTCTGCAGGCATTGATTGTTTTGAAAAAGGGTGCTCAACTACTAAAATATGGTCGTAAGGGAAAGCCTAAGTTTTGTCCGTTTAGACTTTCCAATGATGAATTGTCTTTAATCTGGATATCTAGTAGCGGAGAAAAAAATCTGAAGCTATCTTCTGTCTCAAGAATTATTCCTGGACAGAGAACTGCTGTTTTTCAACAATATCTGCATCCTGAGAAGGACTATCTGTCTTTTTCACTTATTTATAACAACGGGAAGCGATCTCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTCAAGGCACTGATATCTTCAGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTATATCTTGATGACAGTAGAGACCTGACATCAAATAGTCCTAGTGAAAGTTCAGTTAGTGCTTCACGAGAAATCAGTTCTCCTGACGTTTCTGTTAGTCTACCAAATACTTCTCCACAATCCTTTTACTCTGAGAATACCTTCAATTTTGAAAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCCAGTCATGGGTCTGCACCAGATGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTGAAAGTTGGTGCTGAGAAAAACACTAGTTATTTTAGCCCAAGGGCTGATATTCTCCTTCCCAGGCCACTGGAGTCCAATGTGGTTTTAGATGTGCTTCAAATAGCATGTGGTGTGAAACATGCTGCTCTAGTCACAAGGCAAGGTGAACTATTCACATGGGGGGAAGAATCTGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCAATGACTTCTACAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGCTGGGGAACTATATACGTGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGGCTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACCGGGCAGCTCTTTACATTTGGTGATGGAACGTTTGGTGTCCTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTAGAATCCTTATCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTATGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCAAGTGCTAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTTGGACATGGAGACAAGGATGCCCGGCTTGAACCAACTTGTGTCCCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGCGGGCACAGTTTGACGGTAGGCCTGACAACATCTGGACATGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTAGGGAGTCCCCAGTCCGATGGAAAGCTGCCGTGTTTGGTTGAAGACAAGCTTGCAGGAGAATCTGTTGAGGAAATTGCATGTGGGGCTTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAACGCCAACTTTGGTTGAAGCCTTGAAAGATAGACATGTTAAATATATTGCATGTGGTTCAAACTACTCAGCTGCCATATGCCTTCACAAGTGGGTATCCGGAGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGGTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGACTTGTGCACTGTCATTCATGTAGTTCTAGGAAAGCACTAAGAGCTGCCCTGGCTCCTAATCCTGGGAAGCCATATCGTGTTTGTGATTCTTGTTTCGTAAAATTGAACAAGGTTGCGGAATTGGGCAATAATAATCGGAGGAATGCAATGCCTCGTTTGTCGGGCGAAAACAAGGATAGATTAGAGAAGTCTGAGCTAAGATTGACCAAGACAGCAGTCCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCACCTCACAAGCGCCGTCTTTGCTACAGCTCAAAGATGTTGTCTTGTCTACTGCTATTGATTTGAAGCGAACAGCTCCAAGACCTGTTCTGACACCGTCTGGTGTAAGTTCCAGGTCTGTGTCCCCTTTCTCTAGAAGGCCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCGGGACTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAAAAAACAAACGAACTTTTGAATCAGGAAGTGTTGAAGTTACGATCTCAGGTTGAGACCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAGGAAGCTATGGCACTGGCTGCCGATGAATCTGCCAAATCTAAGGCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCTCCAGGCACTTATGATGCTGAGAACATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGCATCCACTATCCAGACTTAAACGGCGAGCGTCACAACAGGGCAGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATAGCCCTCGAATCATCCCTGATGAATAGAACCGAGGGCACTTCGCCTGGATCCTATGGTGCTAACCTTTACCAGCAAAACCGGGAATCTGTAACCTCTAATGGGACCGATGATTACCCGGATGTTAAATTACCAAATGGCAGCGGCATGATTCAGGCAAGCAGCAGTACCGTGTCAGATACAGTTGATGGTAGGGATTCTGGACATTTCCAAGATGATGAGAGTGCTTTAAGATCAAAGAACGCCACATCCCCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAATATGAACCCGGTGTCTATATAACACTCGTCGCCCTGCGAGATGGAACAAGAGATCTGAAGCGAGTGCGTTTCAGCCGGCGAAGATTTGGAGAGCATCAAGCAGAGACGTGGTGGTCGGAGAACCGTGATAAGGTATACGAAAGGTACAATGTCCGAAGTACGGATAAATCTTCCGGCCAAGCGGGGCGTAGGGCAGAGGGTGCTGGTTCACCTGTTTTATAA 3339 0.4468 LPCYFFILQALIVLKKGAQLLKYGRKGKPKFCPFRLSNDELSLIWISSSGEKNLKLSSVSRIIPGQRTAVFQQYLHPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDSRDLTSNSPSESSVSASREISSPDVSVSLPNTSPQSFYSENTFNFERSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGAEKNTSYFSPRADILLPRPLESNVVLDVLQIACGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVVQPRLVEAMTSTTVDFVACGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGHVFTMGSTVYGQLGSPQSDGKLPCLVEDKLAGESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVAELGNNNRRNAMPRLSGENKDRLEKSELRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTAIDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRSQVETLRQRCELQELELQRSAKKTQEAMALAADESAKSKAAKEVIKSLTAQLKDLAERLPPGTYDAENIRPAYLPNGLEPNGIHYPDLNGERHNRAESISGSSLASIALESSLMNRTEGTSPGSYGANLYQQNRESVTSNGTDDYPDVKLPNGSGMIQASSSTVSDTVDGRDSGHFQDDESALRSKNATSPANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDKVYERYNVRSTDKSSGQAGRRAEGAGSPVL 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5662g00001 1112 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 621 683 IPR017455 -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 971 1027 - -
Mupr5662g00001 1112 Coils Coil 873 893 - -
Mupr5662g00001 1112 Pfam Transcription factor regulating root and shoot growth via Pin3 1033 1088 IPR013591 -
Mupr5662g00001 1112 SUPERFAMILY PH domain-like 7 116 - -
Mupr5662g00001 1112 Gene3D - 174 450 IPR009091 -
Mupr5662g00001 1112 Gene3D - 451 621 IPR009091 -
Mupr5662g00001 1112 ProSiteProfiles BRX domain profile. 1034 1089 IPR013591 -
Mupr5662g00001 1112 CDD PH_PLC_plant-like 7 117 - -
Mupr5662g00001 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 384 394 IPR000408 -
Mupr5662g00001 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 692 IPR013083 -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 513 564 IPR000408 -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 775 809 - -
Mupr5662g00001 1112 Pfam FYVE zinc finger 617 683 IPR000306 GO:0046872
Mupr5662g00001 1112 SUPERFAMILY FYVE/PHD zinc finger 617 689 IPR011011 -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 461 512 IPR000408 -
Mupr5662g00001 1112 SUPERFAMILY RCC1/BLIP-II 228 618 IPR009091 -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 140 171 - -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 398 449 IPR000408 -
Mupr5662g00001 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 436 446 IPR000408 -
Mupr5662g00001 1112 SMART fyve_4 615 684 IPR000306 GO:0046872
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 460 507 IPR000408 -
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 291 339 IPR000408 -
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 343 394 IPR000408 -
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 512 561 IPR000408 -
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 566 613 IPR000408 -
Mupr5662g00001 1112 Pfam Regulator of chromosome condensation (RCC1) repeat 398 446 IPR000408 -
Mupr5662g00001 1112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 277 287 IPR000408 -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 778 795 - -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 989 1005 - -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 397 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 343 359 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 400 414 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 293 309 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 502 520 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 560 581 IPR000408 -
Mupr5662g00001 1112 PRINTS Chromosome condensation regulator RCC1 signature 274 287 IPR000408 -
Mupr5662g00001 1112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 51 889 - -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 291 342 IPR000408 -
Mupr5662g00001 1112 MobiDBLite consensus disorder prediction 1090 1112 - -
Mupr5662g00001 1112 FunFam PH, RCC1 and FYVE domains-containing protein 1 200 450 - -
Mupr5662g00001 1112 FunFam Putative E3 ubiquitin-protein ligase HERC1 623 691 - -
Mupr5662g00001 1112 CDD FYVE_like_SF 626 679 - -
Mupr5662g00001 1112 Coils Coil 817 858 - -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 290 IPR000408 -
Mupr5662g00001 1112 Pfam Pleckstrin homology domain 11 116 IPR001849 -
Mupr5662g00001 1112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 565 616 IPR000408 -
Mupr5662g00001 1112 FunFam PH, RCC1 and FYVE domains-containing protein 1 451 622 - -
Mupr5662g00001 1112 Pfam Transcription factor BRX N-terminal domain 868 903 IPR027988 -
Mupr5662g00001 1112 Gene3D - 8 122 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5662g00001 Mupr-Chr5662 13057 19504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5662g00001 1035 1105 Major Intrinsic Protein MIP AT1G31880 47.887 6.68e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5662g00001 - - gmx:100783270 1996.86