Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr565g00027 CCGTTGCTCTGCTTCTACCCTGCGGAAGAAGAAGAAGATAAAGAAGAAGAAGCCGCCATGGTGAAGTACTCCAGAGAACCCGATAATCCCACCAAGTCCTGCAAGGCTAGAGGTGCCGACCTCAGAGTGCATTTCAAGAACACCAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGCTAAAGCTAAAAGATACTTAGAGGATGTTTTAGCCCACAAACAGGCTATTCCTTTTCGACGCTTCTGTCGTGGTGTTGGGAGGACAGCCCAGGCTAAGAACAGGCACTCTAATGGGCAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTGAAGAATGCTGAGAGTAATGCAGAAGTGAAAGGTTTGGATGTCGATGCTCTGCACATTTCACATATCCAGGTTAATCAGGCACAGAAGCAGAGACGCCGTACCTACAGAGCTCATGGGAGAATCAACCCTTACATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACGCAGTTGGCAACAAGCAAGAAGAAAGGTGCTCTTCGAAGTGGTGCTTCATCCTAA 603 0.4842 PLLCFYPAEEEEDKEEEAAMVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALHISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr565g00027 200 Pfam Ribosomal protein L22p/L17e 36 171 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mupr565g00027 200 PANTHER 60S RIBOSOMAL PROTEIN L17 20 192 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mupr565g00027 200 MobiDBLite consensus disorder prediction 173 200 - -
Mupr565g00027 200 MobiDBLite consensus disorder prediction 17 33 - -
Mupr565g00027 200 FunFam 60S ribosomal protein L17 20 194 - -
Mupr565g00027 200 CDD Ribosomal_L22 34 170 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mupr565g00027 200 SUPERFAMILY Ribosomal protein L22 20 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
Mupr565g00027 200 ProSitePatterns Ribosomal protein L22 signature. 146 170 IPR018260 GO:0003735|GO:0005840|GO:0006412
Mupr565g00027 200 MobiDBLite consensus disorder prediction 10 33 - -
Mupr565g00027 200 Hamap 50S ribosomal protein L22 [rplV]. 19 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mupr565g00027 200 NCBIfam 50S ribosomal protein L22 23 173 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mupr565g00027 200 Gene3D Ribosomal protein L22/L17 20 199 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr565g00027 Mupr-Chr565 248260 250293 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr565g00027 20 193 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 91.379 8.96e-119 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr565g00027 K02880 - gmx:100305777 347.051