Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr564g00005 ATGAGTCCAAACGTAGATTACTTGTCGTTAGTGGCAAAACAAGCGGAGCAATTACGAATAGACGGCAACAACTGCTTCAAGAAAGATCGTTTTGGAGCTGCCATTGATGCTTACACTGAGGCAATTACGCTGTGCCCCGATGTTCCGGTGTATTGGACCAATCGTGCTCTCTGCCATCTCAAGCGCAATGACTGGACCAAAGTAGAGGAAGACTGTCATCAAGCTATTAAGCTTGACAACAATTCAGTCAAGGCCCACTATATGTTAGGTCTTGCATTGCTACAGAGACAAGAATTTGCTAAAGGAATCTTAGAACTGGAGAAGGCTTTGGAACTTGATAGAGGTGCCCATCCTAAGGGCCAAATGGTGGAGGAGATATGGCAAGAGCTTGCAAGAGCAAAATATCTGGATTGGGAGCATTCATATACTAAGCGATCATGGGAACTGCAGAGCTTGAAAGAAGCTTGTGAGTCCGCTCTAAAGGAAAAACATTTTCTTGAAGTCCCCCACACGGAAGTATTTATAGAAGATGCTGATGCTACTACTTCCCACTTAGAACAATTGGAGGCTTTAGGAAGAGTGTTTAATAAAGTTGCAGAAGATGACATGCCTACTGAGGTGCCGGATTATCTATGCTGTGGAATCACACTTGATATTTTTTGTGATCCTGTCATTACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTTGACCATCTTGAGAAGGTGGGTATGTTTGATCCAGTCACTCGAGATCCTCTTGATCCATCACAGCTAATACCCAACTTAGCCATAAAGGAAGCAGTTCAGGCATTCTTGGACAAACAT 831 0.4356 MSPNVDYLSLVAKQAEQLRIDGNNCFKKDRFGAAIDAYTEAITLCPDVPVYWTNRALCHLKRNDWTKVEEDCHQAIKLDNNSVKAHYMLGLALLQRQEFAKGILELEKALELDRGAHPKGQMVEEIWQELARAKYLDWEHSYTKRSWELQSLKEACESALKEKHFLEVPHTEVFIEDADATTSHLEQLEALGRVFNKVAEDDMPTEVPDYLCCGITLDIFCDPVITPSGLTYERAVILDHLEKVGMFDPVTRDPLDPSQLIPNLAIKEAVQAFLDKH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr564g00005 277 SMART tpr_5 49 82 IPR019734 GO:0005515
Mupr564g00005 277 SMART tpr_5 15 48 IPR019734 GO:0005515
Mupr564g00005 277 SMART tpr_5 83 116 IPR019734 GO:0005515
Mupr564g00005 277 SUPERFAMILY TPR-like 8 133 IPR011990 GO:0005515
Mupr564g00005 277 ProSiteProfiles U-box domain profile. 206 277 IPR003613 GO:0004842|GO:0016567
Mupr564g00005 277 Gene3D Tetratricopeptide repeat domain 11 167 IPR011990 GO:0005515
Mupr564g00005 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 277 IPR045200 GO:0000209|GO:0061630
Mupr564g00005 277 SUPERFAMILY RING/U-box 200 277 - -
Mupr564g00005 277 SMART Ubox_2 210 273 IPR003613 GO:0004842|GO:0016567
Mupr564g00005 277 Pfam U-box domain 207 277 IPR003613 GO:0004842|GO:0016567
Mupr564g00005 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 277 IPR013083 -
Mupr564g00005 277 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Mupr564g00005 277 Pfam Tetratricopeptide repeat 84 114 IPR019734 GO:0005515
Mupr564g00005 277 CDD RING-Ubox_CHIP 207 277 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr564g00005 Mupr-Chr564 65419 70548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr564g00005 9 277 U-box Gene Family AT3G07370 65.556 7.07e-134 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr564g00005 K09561 - gmx:100796519 434.876