Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr564g00001 ATGGCTAAGCCAGGGGTGTTGGACTCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGAGAGCTGCAGAGGTTGGTGAGGTCCATTGTGGATGATGAGGATTGCAGCACTGAGACCATTGATCAAGCCAAAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAGGAGGTCTTCAATGTCTTTGAAGCTGCACAACACGAGTGTGACTTCTTGCCCTGATGAATTCAAGTGCCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCATTCATTAAAAAATGGCTAAATGCTGGAAACAGGACTTGCCCTCGGACACATCAAGTCCTCTCACACACTGTGCTTACACCAAATCACTTAATAAGGGAAATGATAGAACAATGGTTTAAAAACCAAGGGATTGAACTGTCAAATACTGTTGAATATATTGATGAGGAGGAAGGTTTAAACGAAGCCAAGCGTGAGCATTTTCTTTGTTTGCTCAAGAAAATGTCTTCAACACTTTGTGATCAGAAGACAGCTGCAAAGGAACTGCGATTGCTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTCTGCGATTCTGCAGATGCCATTCCCCAGTTGCTCAAGCCAATTTGTGGGAGAGATTCTTTTAGTACTATTCACCCTGATCTCCAAGAAGATGTGATCACAACACTCCTCAACATCTCCATTCATGACAACAACAAAAAGCTAGTGGCTGAAACTCCTATGGTAATTCCACTCCTTATGAGAGCATTAAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCACTTTTCACTTTGTCAGCTCTGGACTCAAACAAGGAAATCATAGGGAAATCTGGTGCCTTAAAGCCATTAATTGATCTCTTGGAAGAAGGGCATCCCTCAGCCATGAAGGATGTTGCTTCAGCACTTTTCAACATATGTGTAATGCATGAGAACAAGGCAAGAGCAGTGAAGGATGGTGCAGTGAGGGTGATTTTGACAAAGATACAGAACCAGGTTCATGTTGATGAGTTACTAGCCATCCTTGCACTGCTTTCAAGTAACCAGAAGGCTGTTCATGACATGGGAGATCTTGGAGCTGTTCCTAGCTTGCTAAGAGTTATCAGAGAGAGCTCGTGCGAGCGCAACAAGGAGAATTGTGTCGCAATCCTTCAAACTATTTGTCTGTATGATAGGTCAAAGTTGAAGGAGATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCACAGAATGGAACATCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCA 1383 0.4367 MAKPGVLDSDPGVMVKKAIELKRELQRLVRSIVDDEDCSTETIDQAKETLCVLKELKLRRRSSMSLKLHNTSVTSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIKKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMIEQWFKNQGIELSNTVEYIDEEEGLNEAKREHFLCLLKKMSSTLCDQKTAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICGRDSFSTIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKEIIGKSGALKPLIDLLEEGHPSAMKDVASALFNICVMHENKARAVKDGAVRVILTKIQNQVHVDELLAILALLSSNQKAVHDMGDLGAVPSLLRVIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr564g00001 461 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Mupr564g00001 461 SUPERFAMILY ARM repeat 180 451 IPR016024 -
Mupr564g00001 461 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Mupr564g00001 461 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Mupr564g00001 461 FunFam RING-type E3 ubiquitin transferase 208 353 - -
Mupr564g00001 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Mupr564g00001 461 Gene3D - 356 456 IPR011989 -
Mupr564g00001 461 FunFam RING-type E3 ubiquitin transferase 356 457 - -
Mupr564g00001 461 SUPERFAMILY RING/U-box 70 150 - -
Mupr564g00001 461 CDD RING-Ubox_PUB 77 129 IPR045210 -
Mupr564g00001 461 Gene3D - 207 355 IPR011989 -
Mupr564g00001 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 342 IPR000225 GO:0005515
Mupr564g00001 461 PANTHER U BOX DOMAIN-CONTAINING 17 451 - -
Mupr564g00001 461 Pfam Armadillo/beta-catenin-like repeat 292 328 IPR000225 GO:0005515
Mupr564g00001 461 SMART arm_5 369 410 IPR000225 GO:0005515
Mupr564g00001 461 SMART arm_5 197 246 IPR000225 GO:0005515
Mupr564g00001 461 SMART arm_5 247 288 IPR000225 GO:0005515
Mupr564g00001 461 SMART arm_5 289 329 IPR000225 GO:0005515
Mupr564g00001 461 FunFam RING-type E3 ubiquitin transferase 75 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr564g00001 Mupr-Chr564 25834 28933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr564g00001 138 461 U-box Gene Family AT3G07360 59.394 3.12e-128 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr564g00001 - - gmx:100809408 834.328