Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5646g00007 ATGATACAAGCAAAAGAGAACAACCAGACAGGAGAGGAGAATGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATAGCGAACGTGATAAGGATCATGCGCAAGATTCTCCCACCGCACGCGAAGATATCAGACGATGCGAAGGAGACAATCCAAGAGTGTGTGTCGGAGTACATAAGCTTCATCACCGGGGAGGCTAACGAGCGTTGCCAGAGGGAGCAGCGAAAGACAATAACTGCAGAGGACGTGCTTTGGGCCATGAGCAAGCTCGGCTTCGATGACTACATCGAGCCCCTCACCATGTACCTTCACCGCTACCGCGAGGTCGAGGGTGACCGCACCTCCATCAGGGGCGAACCTCTCGGGAAGAGGACCGTTGAATACGCCACTCTTGGTGTTGCTGCTGCTGCTTTTGTGCCACCTCCCTTTCACCACAATGGCTACTTCGCCTCTTACATTAGGGAACAACCCCCCAATGCTGCGTCCTCTCATCATCACCATGGAATCTCCAATGCTGAACCTAATGCTCGCTCAATATGA 543 0.5304 MIQAKENNQTGEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREVEGDRTSIRGEPLGKRTVEYATLGVAAAAFVPPPFHHNGYFASYIREQPPNAASSHHHHGISNAEPNARSI 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5646g00007 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mupr5646g00007 180 MobiDBLite consensus disorder prediction 160 180 - -
Mupr5646g00007 180 FunFam Nuclear transcription factor Y subunit B-6 13 129 - -
Mupr5646g00007 180 MobiDBLite consensus disorder prediction 164 180 - -
Mupr5646g00007 180 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mupr5646g00007 180 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982
Mupr5646g00007 180 SUPERFAMILY Histone-fold 21 119 IPR009072 GO:0046982
Mupr5646g00007 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Mupr5646g00007 180 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Mupr5646g00007 180 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Mupr5646g00007 180 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5646g00007 Mupr-Chr5646 50448 50990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5646g00007 11 114 CCAAT-HAP3 Transcription Factor Family AT5G47670 92.308 7.98e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mupr5646g00007 CBFD_NFYB_HMF 4.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5646g00007 K08065 - gmx:100194424 315.079