Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr563g00003 ATGTCTTCTGCTGCCGCCGGCGTTACCTCCAACGCTCCTCTGCAATATTTTTGCTATCAGTGCAACCGCACCGTCTCCATTACTCCTTCCTCTGATCTCGCGTGCCCCAATTGCAACGGTGGCTTCATCGAGGAAGTGGAAAATCCAATTCCGAGCACTCCCCATCCGTTCTCTTTCACCTACGAGTTTGGCGGCGACGATCTCCCCAGCCTCTTGGGCGGTCGATCGTCCCCTTTGGTAGAAGCTGACGCCTTCAATCCTTTGGTGTTCCTTCAGAACTACATTCAAACCCTGAGAGCCGGTGGCGCTAATTTTCAGTTAGTAATTGACAACTCTGGGGACCCCAGTGGAGCATTTCGTCTCCCCACAAATCTCAACCTTGGCGATTACTTCTTCGGGCCGGGTCTGGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCTAACCGGTATGGGACTCCCCCAGCTTCCAAGTCTGCCATCGAGGGGCTCCCAAACATCTCGATTACAGAGGATTTGTTGGCTTCGGATTCATCACAGTGTGCGGTGTGTAAAGACACGTTCGAGCTCCGGGAAGTGGCCAAGCAGATGCCCTGTAAACACATTTATCATTCCGATTGCATCCTACCTTGGTTGGAATTGCACAATTCTTGTCCTGTGTGTCGGTATGAGTTACCAACTGATGATCCTGACTACGAGCAAAGAGCTCGAGGCCAATCTACAGCTGGTGATACAGACACCTCGCAGTCACCCAGGGAGCGGAGGTTTAGGGTTCCTTTGCCCTGGCCCTTTAGGCAGTTTTCTTCCGTTGCCGAGACAAGCAATACCAACGGAAACAATACTGGGGAATCAAATCATAACTTTGACTCAGAAACCAGGCAAGAAGATCTTGATTGA 897 0.5128 MSSAAAGVTSNAPLQYFCYQCNRTVSITPSSDLACPNCNGGFIEEVENPIPSTPHPFSFTYEFGGDDLPSLLGGRSSPLVEADAFNPLVFLQNYIQTLRAGGANFQLVIDNSGDPSGAFRLPTNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEGLPNISITEDLLASDSSQCAVCKDTFELREVAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRARGQSTAGDTDTSQSPRERRFRVPLPWPFRQFSSVAETSNTNGNNTGESNHNFDSETRQEDLD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr563g00003 298 SUPERFAMILY RNA polymerase subunits 14 43 IPR029040 -
Mupr563g00003 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Mupr563g00003 298 FunFam E3 ubiquitin-protein ligase RING1-like 142 228 - -
Mupr563g00003 298 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Mupr563g00003 298 Pfam Ring finger domain 180 222 IPR001841 -
Mupr563g00003 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 80 226 - -
Mupr563g00003 298 MobiDBLite consensus disorder prediction 232 298 - -
Mupr563g00003 298 SUPERFAMILY RING/U-box 162 229 - -
Mupr563g00003 298 SMART ring_2 181 221 IPR001841 -
Mupr563g00003 298 MobiDBLite consensus disorder prediction 267 287 - -
Mupr563g00003 298 CDD RING-H2_RNF126-like 180 222 - -
Mupr563g00003 298 Pfam zinc-ribbon 15 45 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr563g00003 Mupr-Chr563 12891 13787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr563g00003 122 237 C3H Transcription Factor Family AT5G01980 49.138 1.51e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr563g00003 K11982 - qsa:O6P43_005293 401.364