Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5632g00004 ATGAGCTTTGGAAGTAGAGGGAAGCTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACACCAAGAGGGACAAGACACTGGCTCAGTACAGTGCAGATGCTGAGATTCTTGCTGAGTTTGAGCAGTCTGGTGTGTCTGGCAAATCATTTGACTACTCAAGGATGGTTCTTGATCCTCCCAGGTTAGTGTCTGGGGAGAAAATGACTGCTTATTTGTCCAAAATCCAAAGGGGTGGCCTCATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGCTTTCAATTGTTGGGTTTGGAGAAGCAAGCTGACTCTAAGAAGTTCATGGGTCTGATTGGGGTTGATGCTGCAACCCTTTTCACTCCCTCTTCTGGGGTTTCCCTTGCAAAAGCTGTGGCTTCCAGGGAAATTTCACTTTTGAACCCAATTTGGGTCTATGCAAGGGCAACCCAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCACGGTCTAGTGATCCGGCATTGTCACTTGCCGGGGCAGTTCAGTCACAGAAGCTGGCTGTTAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTCTTGTGTGACACGGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTACAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCTGATTTGGAGCCTTACTTGGGTTTGCATTATCCTGCCACGGATATCCCACAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTCAGGATGATTTGTGATTGCCATGCAAAGCCTGTTAAGGTCATTCAGAGTGAAGGATTAAGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGTTACCCCATGGTTGTCACACACAGTACATGGCCAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATTTTAGTCAATGGAAAGGATACAACAAGGCTTTGGGGTTTGTTAGTTTGTCATCACACTTCACCACGCTATGTGTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTGATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAGAAGAGAATTCTTAAAACACAAACCTTGCTGTGTGACATGCTCCTTCGTGATGCGCCATTTGGCATTGTGACTCAATCCCCAAGTATCATGGATCTCGTGAAATGTGATGGGGCTGCCTTGTATTATGATGGAAACTGTTGGCTGTTAGGCACAACCCCAACTGAAGCACAGGTGAAAGACATTGCAGAATGGTTACTTAGTAATCATGGGGACTCAACAGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGTGCTGCTTCGTTGGGCGATGCAGTTTGTGGCATGGCCACTGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGAGGAAAAATGAACCCAAGATCATCATTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCCATTCACTCATTACAACTAATAATAAGAGATTCATTCCAAGACACGGAGAACACGGGTCCAAAGACTTTAAATTATATACAGAAAAGTGACACTCCAACTGGAGCGGTGGATGAACTCAGTTCAGTAGCGCTTGAAATGGTGAGATTAATTGAGACAGCAACAATCCCGATTTTTGGAGTTGATTCAGATGGCATAATCAATGGATGGAATTCAAAAATTGCTGAATTGACAGGTCTACAGGCCAGTGAAGCTATGGGAAGATCCCTGCTAAATGAAATTGTACATGCGGACTCATGTGATACTTTTAAAAATACTCTAAGAGCAGCCTTGCAAGGCCAGGAGGACAAGAATGTTGAGTTGAAAATAAAACGCTTTGGGCTTCATCAACAACAGGAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATGCTATTATTGGGGTATGCTTTGTAGGTCAAGACCTCACTTATGAGAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCATACAGAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGACGAGAATGCCTGCTGCTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAACTGCTTCCTGGTGAAATTTTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAACTTATAGAGACTTATATAACAGCAAACAAAAGAATTGATGCTGGAGGGAATATGCTTGGCTGTTTCTGCTTCTTGCAGATTGTATCCCCAGACCTGAATCAGCCCTCTGAAGAACACAAGCCTAGAGGCAAGGAAAGCATTTTTTCTGAATCCAAGGAGTTGGCTTATATACTACAAGAGATGAGGAAACCTTTAAATGGTATACGATTCACACACAAACTTTTGGAAAATACAACTGTCACAGAAAACCAAAAACAATTTCTTGACACTAGTGATGCATGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTAACGAAGGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATAGTTTAGACGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGAAAAGAACTTGCAACTGTTCCATGAAATTCCTGAGGAAATAAAAATGCTTTGTCTATATGGTGACCAAATTAGGCTTCAGGTGGTCTTGTCTGACTTTTTGCTTAATGTAGTCAGCCATACACCATCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGATGGCAATGAGTTTATCCATCTGAAGTTCAGAATGACCCATTCTGGTCAAGGTCTTCCTTCTGAGGTTCTTCATGATATGTTCGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGACTATACATGTCCAGGAAAATCCTCAGCAGGATGAATGGTCATGTCCACTACGTAAGAGAACAAAATAAGTGTTATTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCATAGGAATTTGCATGCAGAGACAAGCATGTTAATCAGCCATACATCATCTTCAAATGTATGA 3393 0.4215 MSFGSRGKLKDTSLSTSAESNMNTKRDKTLAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLEKQADSKKFMGLIGVDAATLFTPSSGVSLAKAVASREISLLNPIWVYARATQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEGLRQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAILVNGKDTTRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYDGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIIRDSFQDTENTGPKTLNYIQKSDTPTGAVDELSSVALEMVRLIETATIPIFGVDSDGIINGWNSKIAELTGLQASEAMGRSLLNEIVHADSCDTFKNTLRAALQGQEDKNVELKIKRFGLHQQQEVVYLMVNACTSRDYTDAIIGVCFVGQDLTYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGELIETYITANKRIDAGGNMLGCFCFLQIVSPDLNQPSEEHKPRGKESIFSESKELAYILQEMRKPLNGIRFTHKLLENTTVTENQKQFLDTSDACERQIMAIIEDTNLGSINEGTLQLNMEEFVLGNSLDAIVSQVMMLIREKNLQLFHEIPEEIKMLCLYGDQIRLQVVLSDFLLNVVSHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGLPSEVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYVREQNKCYFLIDLEIRTRKERHRNLHAETSMLISHTSSSNV 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5632g00004 1130 Pfam His Kinase A (phospho-acceptor) domain 882 943 IPR003661 GO:0000155|GO:0007165
Mupr5632g00004 1130 Pfam Phytochrome region 402 577 IPR013515 GO:0006355|GO:0009584
Mupr5632g00004 1130 CDD PAS 749 857 IPR000014 -
Mupr5632g00004 1130 FunFam Phytochrome 751 859 - -
Mupr5632g00004 1130 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Mupr5632g00004 1130 Pfam PAS fold 73 186 IPR013654 GO:0006355
Mupr5632g00004 1130 ProSiteProfiles PAS repeat profile. 738 783 IPR000014 -
Mupr5632g00004 1130 SMART gaf_1 219 399 IPR003018 GO:0005515
Mupr5632g00004 1130 NCBIfam PAS domain S-box protein 611 727 IPR000014 -
Mupr5632g00004 1130 Coils Coil 665 685 - -
Mupr5632g00004 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Mupr5632g00004 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 992 1093 IPR003594 -
Mupr5632g00004 1130 FunFam Phytochrome 600 732 - -
Mupr5632g00004 1130 CDD HATPase_Phy-like 991 1104 IPR044767 -
Mupr5632g00004 1130 SMART HKATPase_4 992 1106 IPR003594 -
Mupr5632g00004 1130 Gene3D PAS domain 605 726 - -
Mupr5632g00004 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 945 1104 IPR036890 -
Mupr5632g00004 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 718 IPR035965 -
Mupr5632g00004 1130 CDD HisKA 880 935 IPR003661 GO:0000155|GO:0007165
Mupr5632g00004 1130 Gene3D - 394 567 IPR043150 -
Mupr5632g00004 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 188 IPR035965 -
Mupr5632g00004 1130 PANTHER OS08G0260000 PROTEIN 71 941 - -
Mupr5632g00004 1130 Pfam GAF domain 219 389 IPR003018 GO:0005515
Mupr5632g00004 1130 Gene3D PAS domain 77 322 - -
Mupr5632g00004 1130 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Mupr5632g00004 1130 CDD PAS 615 722 IPR000014 -
Mupr5632g00004 1130 FunFam Phytochrome 394 524 - -
Mupr5632g00004 1130 PIRSF Phytochrome_conventional 7 1113 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mupr5632g00004 1130 Gene3D - 200 550 IPR029016 -
Mupr5632g00004 1130 MobiDBLite consensus disorder prediction 1 27 - -
Mupr5632g00004 1130 SUPERFAMILY GAF domain-like 199 385 - -
Mupr5632g00004 1130 Gene3D PAS domain 751 862 - -
Mupr5632g00004 1130 SUPERFAMILY GAF domain-like 397 575 - -
Mupr5632g00004 1130 Gene3D - 923 1098 IPR036890 -
Mupr5632g00004 1130 Pfam PAS fold 607 721 IPR013767 GO:0006355
Mupr5632g00004 1130 Pfam PAS fold 738 857 IPR013767 GO:0006355
Mupr5632g00004 1130 SMART HisKA_10 880 945 IPR003661 GO:0000155|GO:0007165
Mupr5632g00004 1130 SMART pas_2 606 673 IPR000014 -
Mupr5632g00004 1130 SMART pas_2 737 807 IPR000014 -
Mupr5632g00004 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 854 IPR035965 -
Mupr5632g00004 1130 ProSiteProfiles Histidine kinase domain profile. 887 1106 IPR005467 -
Mupr5632g00004 1130 FunFam Phytochrome 943 1110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5632g00004 Mupr-Chr5632 18656 25495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5632g00004 15 1106 Histidine Kinase Gene Family AT4G18130 64.040 0.0 1478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5632g00004 K12123 - gmx:100808192 2086.61