Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5623g00003 ATGCTTCGGGCCTTGGGAGGAAGCCAAGATGAGGTTTTGTTTGACCCTGTATTGCAAAGAGAGGAAAACAGAGAACTAAAACAGAATTTGAAAACCAAGGCTGAAGTTTTAAGAGACATAGAACTCTCTGTGGTTCGAAGAAACATGGAAGAAGTTGTATTGCTGGTTGATGATTTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAAGCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCATAGGGATTGCATTCAAACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGCCTCCAGCAATATGAACCTGGATATACAGCAGCACCAAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAAGGATTGAACAAGAACCGTTGAACACAAGAATAGTGAGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCGGATAGAAGCGCGGCTTGCTGTCGATCCCTGGCTTTAGCTCTTACACTCATCTTGCTTGTAAGACATCTTTTTGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGGGCCAGTGGAATTATTATACCCATGTACATAGTTATTAAGACGATCGGAGCCATTCATAACAATATTAAGCGTCACCATCATCAGGATTCTGACGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACAACAGATGATGCAATTTTAAGACATTCAGAATCATAG 828 0.3998 MLRALGGSQDEVLFDPVLQREENRELKQNLKTKAEVLRDIELSVVRRNMEEVVLLVDDLRSLSGISRCRICHEEEFESSKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAAPKKSQIADAAMTIRDSLQISRIEQEPLNTRIVSIVEGNNYSECTYAADRSAACCRSLALALTLILLVRHLFALLTDGMEDYPFTILTVFLLRASGIIIPMYIVIKTIGAIHNNIKRHHHQDSDDDSSISDGDDEENETTDDAILRHSES 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5623g00003 275 CDD RING_CH-C4HC3_MARCH 68 115 - -
Mupr5623g00003 275 FunFam E3 ubiquitin-protein ligase MARCH4 57 125 - -
Mupr5623g00003 275 SUPERFAMILY RING/U-box 67 120 - -
Mupr5623g00003 275 ProSiteProfiles Zinc finger RING-CH-type profile. 60 122 IPR011016 GO:0008270
Mupr5623g00003 275 Pfam RING-variant domain 68 115 IPR011016 GO:0008270
Mupr5623g00003 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 126 IPR013083 -
Mupr5623g00003 275 Pfam Protein of unknown function (DUF3675) 121 233 IPR022143 -
Mupr5623g00003 275 MobiDBLite consensus disorder prediction 243 275 - -
Mupr5623g00003 275 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 62 243 IPR033275 -
Mupr5623g00003 275 SMART ringv_2 67 116 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5623g00003 Mupr-Chr5623 22034 25364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5623g00003 68 115 C3H Transcription Factor Family AT2G37950 44.898 2.34e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5623g00003 - - gmx:100776501 407.142