Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr561g00007 ATGGAGTCTTGGAGCTATGTTGGTGAGGAGAAAGGGTATGTCTCCAGTGAGGCACTCTCACCTCCCAACACACTTGGGAGAAGCAAAGGTTCCTTTTTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGGGGCAGCAAAATGTTGAGGATCAAGATTTTGAGGAGTTGGGTTTTCCAGGTATGTTGGGGAAACAGCTGTGTGGTGATCCTATTGGAACTGTTCAGAGCAGAAAGGTGGATGATGTTGTTGAGTGCAGAATCACTAGTCCTAGTCCTGTTGTGCCTGCCCCAAATTCATTTTCTGCAAGGGAGGACTTCAATTCCAAGCTTTCAAACTCGCTGAGGGACTCTAATGGTGGCAATTCGCTCATTGATTTGAAGCTGGGTAGATTTGCTGACCATGGAGATGCCATGGTCCCAACATTTTCCAAGGGAGCCCCCATCTTGTCTTCGTCGGAGTCGTCAACGCCGACGAAGAGGGTGAGAGCTTCTGGGGTCCATTCTCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTCAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGCAAACGCCTTGCAGGTCATAATGAGCGTCGAAGAAAGCCACAAGTGGGTATTCACTCTGGAAAAGCAGGGAGGTTGCTTCAGCCATATGGTGATAGCAGATTCCAGGACACCATGCTAACATCATCTTTTATCTGCCAAGAGATACTCCCCAGTGGGGTCTTGTCTTCTGAGAAATATGGAGCAAGTGACTGGTGGAGACCTATAAAAGCTGAAGACAGCACTGGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTCTTACTAATGGACATCCTCAGTCAAGATCTCTATTTCCTTCGTATGGTGAAAAACAACTTCAATTTCTTCACGAAAATGGCGCTACATCTGCTACAGGAAACATTTTCTCTGAAAACAATAACCAGTATCATCCACCTTCCCTTGGTGGCCAAAATTCTGGGTCACAATCACTATTCCAGGACACCTCCTTAGGAAGTGAGGACTTCAATGTTTTTGATACAGAATCAGCAGTTCAAGGACTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCTCAGAACTCTTCAAGCCAATCATCAGGAATTCCCATGGCACGCCCGATTGTTATACCAAGCAGCCATAGCCATTACAGCATGAGTCAGGTTTCTGAAAAGATGATGGGAATAAGTTCCCAGGCTTCAAGTGGAGTGTCAGATAGGTTTCCATCTGAATTCAATCCTGCTGATGGAAGTCACCTTAGTCCCATATTGATATCAGACAACAATGAAATTGTCAATTTTGAAATGGCAGATGGTATCTTCCAAGGATCAGATTTCGTGAATGTGAAAGATCGTCTTTCCTGTGAAGATGGCCTCACCATTAACTTGCTTCAACTTTCATCACAACTTCAGCGTGTTGAACATCAGAGGCAGTCCTTGCAGACTCCAATCCCAGTCATCCTATTCCTTAACAATGTAGGGCACAGTGGGGAGAAGCTTAAAATG 1692 0.4492 MESWSYVGEEKGYVSSEALSPPNTLGRSKGSFLGWELKTPCSFSNDMGQQNVEDQDFEELGFPGMLGKQLCGDPIGTVQSRKVDDVVECRITSPSPVVPAPNSFSAREDFNSKLSNSLRDSNGGNSLIDLKLGRFADHGDAMVPTFSKGAPILSSSESSTPTKRVRASGVHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFQDTMLTSSFICQEILPSGVLSSEKYGASDWWRPIKAEDSTGFTFRPLSSIPLTNGHPQSRSLFPSYGEKQLQFLHENGATSATGNIFSENNNQYHPPSLGGQNSGSQSLFQDTSLGSEDFNVFDTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARPIVIPSSHSHYSMSQVSEKMMGISSQASSGVSDRFPSEFNPADGSHLSPILISDNNEIVNFEMADGIFQGSDFVNVKDRLSCEDGLTINLLQLSSQLQRVEHQRQSLQTPIPVILFLNNVGHSGEKLKM 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr561g00007 564 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Mupr561g00007 564 MobiDBLite consensus disorder prediction 354 383 - -
Mupr561g00007 564 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
Mupr561g00007 564 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Mupr561g00007 564 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 541 IPR044817 GO:0003677
Mupr561g00007 564 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Mupr561g00007 564 Pfam SBP domain 177 250 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr561g00007 Mupr-Chr561 18709 22980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr561g00007 128 355 SBP-box Gene Family AT1G69170 45.378 2.52e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mupr561g00007 SBP 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr561g00007 - - gmx:100777766 959.518