LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5605g00003	ATGGAAAGCCAGTTCTTTCTCAATGCTGGGGTGTCACAAACACAACAACACTCCCTTCACTTTGAACCTTCTCCACCACCACCTCCTTCTTCAGTGTGGCAACAATCACTCTCACAAACCATGGGAATTCAACCAACAGTTATGAATTGTTCTGTCTCTGAGAAAACCCAGGATTGCTTTTACAACCCCAATTGGGACAAGTCAACAGATCATGCCCTTCACCACTTTGATTCCTCAGCACTGAGTTCAATGGTATCATCCCCATCCTCATCATCCAACCCCAACAACATCACCAACATGTCCAATGAGAATTTCATCATCAGGGAATTAGTGGGGAAATTGGGAACTATTGGAAGAAGCTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGCTGTGGCATCTTCTTACATGAACAGTAATGGAAATAACAGCACCAACACCTCTTGTTACACCACCCCTTTGAGTTCCCCTCCAAAGGTGAACATTGTCCACAGTTTGGTGAATGAGAGGTTGACAAATTTGGGAGGAAAGCCAATGGCTTTGAGTTCCCCTGTGGCTGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTCTCTTGCTTTGGCAACAGGAGTTTCAATGATAGGAGTGTTCAATTGGGGGTCAACAATGGTGAATTGACTCAGAGATCTGCACCAGTAATGGAGCATGATGGGAAGTTACCTAGAGTCTCAAGTAGTCCATTGCTGAAGACACTTGGATCTCAAATGGGTGCCCTAGAGAACAAGAATTCAGCATTTCAGGAGCAGGAGAAAATGGAAATGGCTAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACTCCAAATGGAGAAACTGGGGTCAAAACTTCCCAAGATGTGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACTAACCCTTCCAAGGGTGTTGAAGCCAGTGAGGATTCAAATTCAAAGCGCAGCAAGACAAATGAGGTTGAGGGAAATGAAAATGATAGAGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAAAAACCGAACAAAAGTAACTCAAAACCTCCAGAGCCTCCAAAAGACTATATTCATGTAAGAGCAAGAAGAGGCCAAGCCACTGACAGCCACAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAATAAGGTCACTGGCAAGGCACTTATGTTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAGTTGGCTTCTGTGAACACAAGGATGGATCTTAACATGGAGAGTCTTGTTTCAAAAGATGTATTTCAATCAAATAATTTTTTAGCAACACACCCAAATCCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGTCTCACCAAAACCCAGCTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTGGACACTTCTTTGTTCCAAAATCTTGGCTTGCAGTTACCTCCCCTAAATGGGTTTAATGAAGCTGCCTCTCAGTTTCCATTAACATTCTGTGAGGAAGATCTCCACACCATTGTTCAGATGGGGTTTGGCCAAACTGCTAACAGGAAAACACCAATACAATCCCCAAGATTCAACGGTTCAAATAATGTACCAGAGATGAAAGTTGAGCTCTGA	1764	0.4342	MESQFFLNAGVSQTQQHSLHFEPSPPPPPSSVWQQSLSQTMGIQPTVMNCSVSEKTQDCFYNPNWDKSTDHALHHFDSSALSSMVSSPSSSSNPNNITNMSNENFIIRELVGKLGTIGRSSDEIPQHSPHPLAVASSYMNSNGNNSTNTSCYTTPLSSPPKVNIVHSLVNERLTNLGGKPMALSSPVAEFSADPGFAERAAKFSCFGNRSFNDRSVQLGVNNGELTQRSAPVMEHDGKLPRVSSSPLLKTLGSQMGALENKNSAFQEQEKMEMANSQEESTISEQTPNGETGVKTSQDVNSRKRKASSKGKAKETSNSTNPSKGVEASEDSNSKRSKTNEVEGNENDRVKVEEESKAVEEKPNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLNMESLVSKDVFQSNNFLATHPNPIFPLDSSAQAFYGHQSHQNPAIHNNIPNRTVTHCSVDPLDTSLFQNLGLQLPPLNGFNEAASQFPLTFCEEDLHTIVQMGFGQTANRKTPIQSPRFNGSNNVPEMKVEL	587

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mupr5605g00003	587	MobiDBLite	consensus disorder prediction	564	578	-	-
Mupr5605g00003	587	CDD	bHLH_AtBPE_like	375	460	-	-
Mupr5605g00003	587	MobiDBLite	consensus disorder prediction	118	140	-	-
Mupr5605g00003	587	SMART	finulus	391	441	IPR011598	GO:0046983
Mupr5605g00003	587	MobiDBLite	consensus disorder prediction	268	296	-	-
Mupr5605g00003	587	MobiDBLite	consensus disorder prediction	328	376	-	-
Mupr5605g00003	587	PANTHER	STEROL REGULATORY ELEMENT-BINDING PROTEIN	265	498	IPR024097	GO:0006355
Mupr5605g00003	587	Coils	Coil	248	268	-	-
Mupr5605g00003	587	FunFam	Basic helix-loop-helix transcription factor	382	455	-	-
Mupr5605g00003	587	Pfam	Helix-loop-helix DNA-binding domain	389	436	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5605g00003	Mupr-Chr5605	12826	16062	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5605g00003	1	546	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G07340	41.410	7.73e-108	329

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Mupr5605g00003		HLH	4.7e-06	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5605g00003	-		-	gmx:100801233	877.085

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