Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5604g00002 ATGGAGCAACTTTATCATGAGATAGCTGAGCTAAGGAAATCAATAAAGGGCTGCATGGATATGCAGATGCAATTACAACAATCCATGAACCCAGATGCTAACACAGTTAAAAAAGAGAAGAAAAAAGAAAAGAAGTCCCATAACAGGGTTCCTAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTTGACTCGCTTTTGTATAGGTGTGGACACATGTGTACGTGTCTAAAGTGTGCCAACGAGTTGCAGTGGAACAGTGGAAAATGTCCTATTTGTCGAGCTAAAATAGTGGACGTTGTTCGAGTATATGTTCACGGTTAG 327 0.4037 MEQLYHEIAELRKSIKGCMDMQMQLQQSMNPDANTVKKEKKKEKKSHNRVPKKGNCCICYEMKVDSLLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVHG 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5604g00002 108 Pfam Zinc finger, C3HC4 type (RING finger) 53 100 - -
Mupr5604g00002 108 PANTHER BNAC05G24000D PROTEIN 1 107 - -
Mupr5604g00002 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 107 IPR013083 -
Mupr5604g00002 108 ProSiteProfiles Zinc finger RING-type profile. 56 95 IPR001841 -
Mupr5604g00002 108 MobiDBLite consensus disorder prediction 29 51 - -
Mupr5604g00002 108 SUPERFAMILY RING/U-box 55 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5604g00002 Mupr-Chr5604 11615 12674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5604g00002 56 104 C3H Transcription Factor Family AT3G06140 40.816 5.55e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5604g00002 - - gmx:100796627 189.504