Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5601g00008 ATGGAAGATATTTACAATATGAACCCTCTTCTCTCTTGTTCTTGTCCCGAGGATATCGTTAGACAAGTCAACGTTAACGTTTCCGCCACTGCTGCTTCTGAATTGAATCTAGGACTTGTGGCTAATAACTTCCTTCATCTCCAACACCCAGAAACTTCGGATATGTCGGATCGGTTCATCAAGTCCCAGATCGCCACTCACCCTCTCTATCCAAATCTACTATCTGCTTACGTAGAATGCCGAAAGGTTGGAGCTCCGCCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAATCCACCCAACCAATGCTCTTCGCGAGATAGGAGATGATCCCGAACTTGACCAGTTTATGGAATCGTACTGCCAAGTTCTTCATAGATACAAGCACGAGTTGTCCAAGCCTTTCAACGAAGCGACCTTGTTCTTGTGTAATATTGAATCACAACTCAGCAATCTTTGTAAGGGAACACTAGCAATGCCACCGGATAACAACCGCTCAGATGAGGCCGCTGGGACATCAGAGGACGAATTATGTTGGGAGAAGGTGGAAGCAGTTGAAGGTCACGAATCTTCTGGGCCACGTCCAGGTGATCAAGAGCTTAAAGAAATTCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATGGTACTGATGAACTGGTGGAGCACCCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAACGGCATTGGAAACCATCTGAAGACATGCGATTTGCCATAATGGATGGTGTAAGTGGCAGCGGCATAGGAGGACCTATGTAA 918 0.4477 MEDIYNMNPLLSCSCPEDIVRQVNVNVSATAASELNLGLVANNFLHLQHPETSDMSDRFIKSQIATHPLYPNLLSAYVECRKVGAPPELASLLEEIAREIHPTNALREIGDDPELDQFMESYCQVLHRYKHELSKPFNEATLFLCNIESQLSNLCKGTLAMPPDNNRSDEAAGTSEDELCWEKVEAVEGHESSGPRPGDQELKEILLRKYGGYLSSLRKEFLKKRKKGKLPKDARMVLMNWWSTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSGIGGPM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5601g00008 305 Pfam ELK domain 201 222 IPR005539 GO:0003677
Mupr5601g00008 305 SMART HOX_1 223 288 IPR001356 GO:0003677
Mupr5601g00008 305 Gene3D - 219 291 - -
Mupr5601g00008 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 291 - -
Mupr5601g00008 305 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Mupr5601g00008 305 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Mupr5601g00008 305 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Mupr5601g00008 305 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Mupr5601g00008 305 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Mupr5601g00008 305 CDD homeodomain 233 285 IPR001356 GO:0003677
Mupr5601g00008 305 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Mupr5601g00008 305 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Mupr5601g00008 305 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Mupr5601g00008 305 SUPERFAMILY Homeodomain-like 223 296 IPR009057 -
Mupr5601g00008 305 SMART ELK_2 201 222 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5601g00008 Mupr-Chr5601 53517 58169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5601g00008 60 299 Homeobox Transcription Factor Family AT1G23380 53.360 1.44e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr5601g00008 KNOX2 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5601g00008 - - gmx:102660463 528.48