Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5600g00001 ATGGGGAAGATCATGGCCTCTTCTAGCTACTCTAATTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCCCCATATTTTCCTCCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAATGTGAGTAAACTTCTCAATGAAGTGCAACCCCACCAAAGGGAGGACGCAGTAAACTCTCTGGCCTATGAAGCTGAGGCGCGGATAAAAGATCCAATGGAGAAGGGGTGGTATAGTCATAGTGTGGTTCTGTGGGGCGCATATGAATAA 309 0.4595 MGKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPMEKGWYSHSVVLWGAYE 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5600g00001 102 ProSiteProfiles LOB domain profile. 13 102 IPR004883 -
Mupr5600g00001 102 Pfam Lateral organ boundaries (LOB) domain 14 87 IPR004883 -
Mupr5600g00001 102 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5600g00001 Mupr-Chr5600 5745 7936 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5600g00001 5 86 AS2 family AT5G63090 87.952 2.19e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mupr5600g00001 LOB 2.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5600g00001 - - gmx:100306630 174.481