Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5582g00003 ATGCCGTCTCTCGTTCCCCTCCCCAACGACGCCGTTCCGAGCAAGTCCCCGAAAGACAAGACAAAGAAGAAGAACAAGGGGGAGAAGAAGGACCCGCCTCATGACGACGCCGTTTCGGAGCGTCCCAGCTCGAAGAAGCGCAGGAAGGATCGTGATGAAGACGAGGAGCAGCAGAAGAGCGAGACCAGCTCGGAGCTCGTGGAGCCCACCGAGAAGGCTCTGAAATCGAAAAGGAAGAAGACGAAGCTTGCAGAAGAAGAAGAAGAAGTTACGAAGGGTGAGGATTCGAACGCGGTTTCCAATTTCAGAATATCGGAGCCGTTGAGGGAGAAACTGAAGGAGAGAGGTATCGAATCGCTGTTCCCCATTCAGGCCATGACCTTCGACACCATCCTCGATGGTTCCGATTTGGTTGGTCGTGCTCGCACTGGTCAGGGTAAAACTCTGGCTTTTGTGTTGCCCATTTTAGAGTCTTTGACAAATGGTCCATCAAAAGCTGCGAGAAAGACTGGCTATGCCAAGCCTCCGAGTGTACTTGTGCTTTTACCTACCAGGGAATTGGCCTGTCAGGTTTATGCTGATTTTGAAGTTTATGGTACTGTGATGGGATTGAGTTCTTGCTGTTTATATGGTGGAACTCCATATCACACTCAAGAGATTAAGCTCAGAAGAGGTGTTGATATTGTTGTTGGAACACCTGGTCGCGTAAAGGATCATATAGAGAGGGAAAACCTTGATCTGAGCCATCTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGCTTTGTCGAAGATGTTGAACTCATTCTAGGTAAGGTGCAGGATGTTGGTAAAGTTCAGACGCTTCTTTTTAGTGCCACTTTGCCAGCATGGGTTAAGCATATTTCTGCAAAGTTTCTGAAACCAGAAAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCCAGCACCAATGTTAGGCATATTGTTCTTCCATGTCTCAGTTCTACCATGTCCCAGATTATACCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGAAAAAGGAGACTGCCTCTGAGCTTGCAGGTTTGTTGACTGGAGCAAGGGCTCTGCATGGTGACATACAGCAGTCACAACGGGAGGTTACATTGTCAGGTTTTAGATCTGGGAAATTCATGACATTGGTAGCTACAAATGTAGCTGCTAGAGGTCTGGATATTAACGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATCCATCGATCTGGGCGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGTCGTTAAAAATATCTCAAATAGAAAGGGAATCAGGTGTGAAATTTGAACGCTTATCTGTCCCTCAGCCTGATGATATTGCCAAAGCTGCTGGTGTGGAAGCAGCCGAAGTGATTACCCAAATTTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAACAAATCTGGTTTATCAGCTGTTGAAATACTATCAAAAGCTCTTGCTAAGGCTGCAGGTTTTACTGAGTTAAAGAAAAGATCACTTCTGGCTTCCAGGGAGGATTATGTTACAGTACTTTTTCAGAGTGGAAGACCTATGTTCTCTCCAATTCATACACTTGGACTCCTGAAGAGATTCTTGCCCGAGGAAAAGGTTGAGGCAGTGCAGGGTCTTAATTTCACTGCTGATAAAAATGGTGCCGTTTTTGATGTACCAGCCAAAGATGTAGATTTATTTCTTACAGGTCTGCAGAGTGATCCTAATGTAAGCCTAGAGGTGATCAAAGCATTGCCACCTCTGCAAGAAAGAGAGCTTCCAAGAGGAGGTAGATTTGGTGGTGGTCGCTGGAATAATGATAGAAGTGGTGGGAATAGGTTCTCCCGTGGAAGAGGTGGCAGGAATGGTGGATTTTTCGGTCAGAAGAAT 2004 0.4591 MPSLVPLPNDAVPSKSPKDKTKKKNKGEKKDPPHDDAVSERPSSKKRRKDRDEDEEQQKSETSSELVEPTEKALKSKRKKTKLAEEEEEVTKGEDSNAVSNFRISEPLREKLKERGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPSKAARKTGYAKPPSVLVLLPTRELACQVYADFEVYGTVMGLSSCCLYGGTPYHTQEIKLRRGVDIVVGTPGRVKDHIERENLDLSHLRFRVLDEADEMLRMGFVEDVELILGKVQDVGKVQTLLFSATLPAWVKHISAKFLKPEKKTADLVGNEKMKASTNVRHIVLPCLSSTMSQIIPDIIRCYSSGGRTIIFTEKKETASELAGLLTGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSLKISQIERESGVKFERLSVPQPDDIAKAAGVEAAEVITQISDSVIPAFKSAAEELLNKSGLSAVEILSKALAKAAGFTELKKRSLLASREDYVTVLFQSGRPMFSPIHTLGLLKRFLPEEKVEAVQGLNFTADKNGAVFDVPAKDVDLFLTGLQSDPNVSLEVIKALPPLQERELPRGGRFGGGRWNNDRSGGNRFSRGRGGRNGGFFGQKN 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5582g00003 668 Gene3D - 324 549 IPR027417 -
Mupr5582g00003 668 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 35 495 - -
Mupr5582g00003 668 Pfam GUCT (NUC152) domain 532 627 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mupr5582g00003 668 SMART helicmild6 361 442 IPR001650 -
Mupr5582g00003 668 CDD GUCT_RH7_like 539 624 - -
Mupr5582g00003 668 MobiDBLite consensus disorder prediction 24 89 - -
Mupr5582g00003 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 310 IPR014001 -
Mupr5582g00003 668 MobiDBLite consensus disorder prediction 1 96 - -
Mupr5582g00003 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 481 IPR001650 -
Mupr5582g00003 668 Gene3D - 36 310 IPR027417 -
Mupr5582g00003 668 SMART ultradead3 116 328 IPR014001 -
Mupr5582g00003 668 MobiDBLite consensus disorder prediction 630 668 - -
Mupr5582g00003 668 Pfam Helicase conserved C-terminal domain 342 442 IPR001650 -
Mupr5582g00003 668 Gene3D - 550 621 - -
Mupr5582g00003 668 CDD DEADc 108 305 - -
Mupr5582g00003 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 458 IPR027417 -
Mupr5582g00003 668 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 254 262 IPR000629 -
Mupr5582g00003 668 Pfam DEAD/DEAH box helicase 121 298 IPR011545 GO:0003676|GO:0005524
Mupr5582g00003 668 SUPERFAMILY RNA-binding domain, RBD 536 619 IPR035979 GO:0003676
Mupr5582g00003 668 CDD SF2_C_DEAD 325 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5582g00003 Mupr-Chr5582 23462 28830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5582g00003 83 482 Eukaryotic Initiation Factors Gene Family AT1G72730 29.540 1.92e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5582g00003 K16911 - vvi:100258263 892.493