Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr556g00001 ATGGGGAGACACTCTTGCTGTTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCAGTTCCAAAACTAGCTGGTCTTCAGAGGTGTGGCAAGAGCTGCAGACTAAGGTGGATAAATTACCTTAGGCCTGATTTGAAGAGAGGAGCATTTTCACAGCAAGAAGAAAATTCCATAATTGAACTCCATGCAGTCCTTGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAACTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCATCGCTGAGGTTGAGAATGATGACAAGGACAAGCCACTCAGAGGTGAGAAAAGCAACCAGAATGAGGTGAGTCTTGTTGAGCCACCAAAAGCAAAGCCAATAATAAATACTACCTCTATGCCTATGGATAGATATCCCCTTGAAGTTTCTTCAACCTCCAAGATCAGCAGTGGCAACAACAACAGCAGCATCAGCACCCCACCCACCCTAGACAGGTTTGGTGCTACCTGTCATGACAGCTCTGATATGATGGGAATGGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACACCAACACCCCACTTTGCTTCATACCAAGTTCCACTTCTTCCCAAATGATGTCAGAGCTGAATTCTAGTATTCTCCATTCTGTGTTCCCAACACAAGTCAAGCCCAGTGTTAATAATAATAATAATAATAATCCCTCTTCAATATCCTCTGGGGATATGGATGGGGTGCAGAACTGGGAAGGCAATGCAATTAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCAGCACTAACTTCCTTGACAGCAGCACAATGACATGGGGGCTGCAGCAGGCAAAGGCAGACAAAGATGCTCATTCCCATCATGTTGTACCTTTGCAATCAGAACAAGAAGACATTAAATGGTCTGAGTATCTCAACAACACCCCTTTCTTTCTGGGAAACACAGTGCAGCACCAAACCACTCACTCTCTCTACACTGACGAGGTTAAGCCAGAAACAACAACAGGCTTCCTAGCAGACGAATCAAGTGCTAGTTGGCACCACAGTCAGCATTTTCTTCAACCTTCGGATATATATACCAAAGATCTGCAAAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1263 0.4497 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPIAEVENDDKDKPLRGEKSNQNEVSLVEPPKAKPIINTTSMPMDRYPLEVSSTSKISSGNNNSSISTPPTLDRFGATCHDSSDMMGMGYFPFQHLNYGPNTNTPLCFIPSSTSSQMMSELNSSILHSVFPTQVKPSVNNNNNNNPSSISSGDMDGVQNWEGNAISKSNGSSSCSIQLQSSSTNFLDSSTMTWGLQQAKADKDAHSHHVVPLQSEQEDIKWSEYLNNTPFFLGNTVQHQTTHSLYTDEVKPETTTGFLADESSASWHHSQHFLQPSDIYTKDLQRFSVAFGQTL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr556g00001 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mupr556g00001 420 SMART sant 66 114 IPR001005 -
Mupr556g00001 420 SMART sant 13 63 IPR001005 -
Mupr556g00001 420 FunFam MYB transcription factor 68 140 - -
Mupr556g00001 420 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mupr556g00001 420 MobiDBLite consensus disorder prediction 119 166 - -
Mupr556g00001 420 CDD SANT 17 61 IPR001005 -
Mupr556g00001 420 MobiDBLite consensus disorder prediction 129 145 - -
Mupr556g00001 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mupr556g00001 420 Gene3D - 68 142 - -
Mupr556g00001 420 PANTHER MYB DOMAIN PROTEIN 55 1 322 - -
Mupr556g00001 420 CDD SANT 69 109 IPR001005 -
Mupr556g00001 420 MobiDBLite consensus disorder prediction 265 290 - -
Mupr556g00001 420 FunFam Myb transcription factor 11 67 - -
Mupr556g00001 420 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mupr556g00001 420 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mupr556g00001 420 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mupr556g00001 420 Gene3D - 11 67 - -
Mupr556g00001 420 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr556g00001 Mupr-Chr556 7199 8683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr556g00001 1 420 MYB Transcription Factor Family AT1G09540 47.368 2.79e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr556g00001 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr556g00001 K09422 - gmx:100788976 646.351