Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5540g00004 ATGACGCGGTCGAAAATCAAGATAAAGAAAATCGACAACATAACGGCGAGGCAAGTAACATTTTCTAAGAGGAGGCGAGGGCTGTTCAAGAAAGCTGAAGAACTTTCTGTGCTATGCGATGCCGAGGTTGGCCTCATTGTTTTCTCCTCTACCGGGAAGCTGTTTGATTATAGCAGCTCTAGGTATGTACGGCATCATCGAACTCTTCTGACTTTTCTCTCAGTATTCATATACATATACATAATAAATAAATACATATACAATTATACATGTATAGATATGAACGACATAATCAGAAGGTATAATACGCACTCCCATGGCATCAACAAATTGGACAGGCCTTCACTAGAACTGCAGCTAGAGGCTAGCAATAGCGCCAAGTTGAGTAAGGAAATTGCAGATAGAACCCAAGAACTAAGTTGGATGAAAGGCGAGGAACTTCAAGGACTAGGCTTAAATGAGTTGCAGCAACTGGAGAAAAGACTTGAAATAGGACTCGACCGCGTGATTGAGATTAAGGAAAAGCGGATGATGAATCAGATTTCTGAACTTCAGAAAAAGGAAATCCTGTTGGAAGAAGAGAACAAGCATCTAAAGAAAAAGCTAGAGGAGAGGGAGATGGAGGCTATGCGTAAAGCAAAAATTGCTTTCATGGCGGACTCAGATATGGGAATGCAAGAAGAAGGCGTTTCATTAGAGTCTCCAAATAACATTAGCAGTTGCATCAGTGACCCTCCTCTCGAGGATGGTTCCTCGGACACATCTCTTAAGTTAGGGCTACCTTTCTCTAACTGA 795 0.4176 MTRSKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSRYVRHHRTLLTFLSVFIYIYIINKYIYNYTCIDMNDIIRRYNTHSHGINKLDRPSLELQLEASNSAKLSKEIADRTQELSWMKGEELQGLGLNELQQLEKRLEIGLDRVIEIKEKRMMNQISELQKKEILLEEENKHLKKKLEEREMEAMRKAKIAFMADSDMGMQEEGVSLESPNNISSCISDPPLEDGSSDTSLKLGLPFSN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5540g00004 264 Coils Coil 155 208 - -
Mupr5540g00004 264 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 ProSiteProfiles K-box domain profile. 118 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr5540g00004 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 MobiDBLite consensus disorder prediction 230 264 - -
Mupr5540g00004 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Mupr5540g00004 264 Gene3D - 13 72 IPR036879 GO:0003677|GO:0046983
Mupr5540g00004 264 Pfam K-box region 123 202 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mupr5540g00004 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 MobiDBLite consensus disorder prediction 226 264 - -
Mupr5540g00004 264 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Mupr5540g00004 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr5540g00004 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5540g00004 Mupr-Chr5540 41129 47731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5540g00004 1 262 MADS-box Gene Family AT2G22540 49.446 1.64e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mupr5540g00004 K-box 4.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5540g00004 - - gmx:100776749 318.546