Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5540g00001 ATGGTCTGCCCAGGTTCAACGCAAATGTCTCGTGACGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCTTAAATCTTTCACCATGTAGTTTGAAGCAAGACTCTTCAGCACTCCATCTTTTAAGTAGACTACCTGCCCCAATAAGGCATGTGCCTTCCAGATGTAATGTTTTCATATGTCGATCTGTCCTAGTACCAGGTGGAGGGAGTGGAACGCCACTCGTGAAATCTGCTAGTGTTATTTTAACAAGGTCATATGATGCTTTACAAGGAAACCCTGTTTTGCTTCAATTGCTCCCGGCCCTTGGTATCATTGCCTTTGCTGTCTGCGGTCTTGAGCCACTCCTTCGTCTAAGCAGGATTTTGTTCCTTCAAAGAACTGACAGTAGTTGGAAGAAAAGTAGTTCGCGATATATTATGACATCATATTTTCAGCCATTGCTGTTGTGGACTGGAGCAATGCTCGTATGCAGGGCTTTAGATCCACTAGTCCTACCATCTGAGACTAGCCAGGCTGTGAAGCAGCGGCTGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTATTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTGTTTCTGGAGGCAAATGACTCCAGTGGTGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAATTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCCGGTGGTTTGGGCACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACGAACTTTCTTTCAAGTATAATGATCCATGCAACTCGGCCATTTATTGTGAATGAGTGGATTCAAACAAAGATCGAAGGATATGAGGTTTCTGGCACAGTTGAGCACGTAGGCTGGTGGTCACCCACCATTGTGAGAGGTGATGATCGCGAGGCGGTTCATATTCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCTAAAAACCCTCAAGTAGAGCAGCAAAAATTGCATAGGAGGGTCTTTTTGGAGGATGTCAATTCCGAAAATCAGGCTCTTAAGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCCCGGCTAGCTACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCAGAAAATATACCTTTTGGGGACACCATTTTCACTCGATCCAGAGCGACAAATCGCCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGATAAAGTTAAGCCCAAATCCAGGATTGATGAAACTATGGCAACTGACACCAAAGGAGACGAGAATTTTTCAGCAACATCAACCTCCTCACCTGATGTAAACTCCAAGGATAAATCCAAGTCAATTTCTGAAGCCCAAATCCAGAATATGAGTTCTGATAGTTCAGTTGCCAAAGCCATACAGCCTAAAAAGGAAAATGCGGGAGATGCAGTAAAGGGAAGTACAGTTCCTGTATCTAAAAACCTTGCACAAAGTGCTGTGCCCGAAACTTCTCCTGTTACTACCCATGAGACCGTTTCTGCTACTTATTCACAGTCAAAGCAAGATGAAGAGAAATCTCCTGCGTCTTCATCATCAGTTAGGCCAAACTTGGAAGAAAACATTCTTCTTGGGGTTGCCCTAGAAGGCTCAAAACGTACTCTTCCAATTGAAGAAGAAATGACTCCATCTCCTACTGCAGAGTCACAAGAATTTGCTGTTCAACGGAATGGGAGTGGACCTCCTGCTAGCAAGGATAAGAAGGATAATCAGATGTCTTCATTTCCAACTGCTCGTCGCATGACCTTGGACTTCACTTCAATTCAATTAGATTGTCTCGCCATGTTAGGCTATATAGTAATCATGGAAACTGTAGTTTTTGTCGTGTATGTGAAGCCAGTCTGTGGTAAACGATTGTGTTTTGTTGCCATCAGTCTTGTGCCACATGGTTTGAGGCAGGATTCTTCAGCATTGCTTTCCAGATTACATGCTCCACTTAGGCCTGTGCCTTCGAGATGTAATGTTTGGCCATGCCGGTGTTCCCTATTGCCAGCTGGACTTGTGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATAATGCTATAGCAGGAAAACCAAGTGTGATTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCTGTTTTTGGTCTAGAGCCGCTCCTGCACCTGAGCAGGAATCTGTTACTCCAAAGGACTGATAGAAGTTGGAAGAATAGTAGTTCACATTATATTTTGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATGTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACCAGTCGAGCTGTGAAGCAACAGCTGCTGAGTTTTGTAAGATCTTTGTCAACGGTGCTTACATTTGCTTACTGTTCTTCAAGCTTACTTCGACAAGCACAAAAATTTTGTATGGAGACAAATGACTCCAGTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTGGGTTTCTCCACACAGAAGTGGTTGACTGCTGGTGGTTTAGGCACAGTATTGCTTTCCCTTGCAGGTCGCGAGATATTTACGAACTTCCTTTCGAGTGTAATGATTCATGCAACTCGGCCATTTGTTGTGAATGAGCATATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACACACCTTGCTATCAGTCATTTGGATGTCAACAAGATTAATAGCATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAACTAGAGCAGAGAAAACTTCACAGAAGGGTTTTTCTGGAGAATATTGATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTCCGTGTAAAGGAGGTAATCCTCTTGGATCTTCTCAAAGTTATCAGTCATCATGGAGCTCGGCTAGCCACCCCCATCCGCACAGTTCAGAAGATATGCAGTGATACTGATCTAGATATTGATCCATTTGATGATGCCATTTCCACTCGTTTCAGATCAAAGAATAACCGTCCTTCAACACTGATAGATCCACCTTATAAAGTTAAGCCTTCAACTCATTCAACTATTACAAATGAGGACAAAGATGCCAAGATTGATGAAACATCTGACTTCAAAGTAGAACGTGATAAATTTGCTGCTACCTCGAGCCCCACATCAACATCTCAAGCCAAAATCCAGAATATGGATGTTGATATTTCAGTCCAGAAGACCTCCAAATCCCAAAAGCCCAAAAAGGAAAGAGCAGGAAGCACAGGAAAGGGAACAACATCCAATGAAGACTACTTCACCATAGATGAAGAGAAATCTGCAGTGTCATCATCATCAGTTAGTTGTTCTTTGGAAGAGATTATTGTTCTTGATGATTCCCTTCGGAACTCAAAGAGAACTCTTTCAATTGATGAAGAAATGATTCAATCCAGCTCTGCAGAATCACAAGTTGCAGTCCATCAACCTCATATTTGCAAGGATAAGAAGGATGGTGAGATGACTTCATTTCCTACAGCTAATGTT 3996 0.4169 MVCPGSTQMSRDVRLNSNIGFCSFHHNRMGVGRLHLVTLNLSPCSLKQDSSALHLLSRLPAPIRHVPSRCNVFICRSVLVPGGGSGTPLVKSASVILTRSYDALQGNPVLLQLLPALGIIAFAVCGLEPLLRLSRILFLQRTDSSWKKSSSRYIMTSYFQPLLLWTGAMLVCRALDPLVLPSETSQAVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKLFLEANDSSGARNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLEDVNSENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSRATNRPFLLIEPPYKVNGEDKVKPKSRIDETMATDTKGDENFSATSTSSPDVNSKDKSKSISEAQIQNMSSDSSVAKAIQPKKENAGDAVKGSTVPVSKNLAQSAVPETSPVTTHETVSATYSQSKQDEEKSPASSSSVRPNLEENILLGVALEGSKRTLPIEEEMTPSPTAESQEFAVQRNGSGPPASKDKKDNQMSSFPTARRMTLDFTSIQLDCLAMLGYIVIMETVVFVVYVKPVCGKRLCFVAISLVPHGLRQDSSALLSRLHAPLRPVPSRCNVWPCRCSLLPAGLVKVATVSLSRSYNAIAGKPSVIQLIPALGIIGFAVFGLEPLLHLSRNLLLQRTDRSWKNSSSHYILTSYFQPLLLWTGVMLMCRDLDPLVLPSETSRAVKQQLLSFVRSLSTVLTFAYCSSSLLRQAQKFCMETNDSSDERNMSIDFTGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNEHIQTKIKGYEVTGKVEHVGWWSPTIVRGSDCEAVHIPNHNLSVNVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPQLEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEVILLDLLKVISHHGARLATPIRTVQKICSDTDLDIDPFDDAISTRFRSKNNRPSTLIDPPYKVKPSTHSTITNEDKDAKIDETSDFKVERDKFAATSSPTSTSQAKIQNMDVDISVQKTSKSQKPKKERAGSTGKGTTSNEDYFTIDEEKSAVSSSSVSCSLEEIIVLDDSLRNSKRTLSIDEEMIQSSSAESQVAVHQPHICKDKKDGEMTSFPTANV 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 1182 1205 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 497 514 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 636 677 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 1162 1254 - -
Mupr5540g00001 1332 SUPERFAMILY Sm-like ribonucleoproteins 963 1033 IPR010920 -
Mupr5540g00001 1332 SUPERFAMILY Sm-like ribonucleoproteins 282 352 IPR010920 -
Mupr5540g00001 1332 Gene3D - 870 977 - -
Mupr5540g00001 1332 Gene3D - 162 296 - -
Mupr5540g00001 1332 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 677 IPR045042 -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 574 619 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 515 556 - -
Mupr5540g00001 1332 Gene3D - 298 353 IPR023408 -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 1207 1232 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 1303 1332 - -
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 646 660 - -
Mupr5540g00001 1332 Pfam Mechanosensitive ion channel 920 1129 IPR006685 GO:0016020|GO:0055085
Mupr5540g00001 1332 Pfam Mechanosensitive ion channel 239 446 IPR006685 GO:0016020|GO:0055085
Mupr5540g00001 1332 MobiDBLite consensus disorder prediction 497 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5540g00001 Mupr-Chr5540 4632 19774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5540g00001 9 657 Mechanosensitive Ion Channel Family AT1G58200 56.176 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5540g00001 K22047 - gmx:100796022 1173.3