Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5535g00002 ATGGGTCTTGATCACGATGCTGGAACTAGCAACTCCGGCCTTCAGCTTATTCTAGGATTAGCTTTGACTGCCACCCCAACATCATCACCGTCCATTTCCAACAAGCTTGATCATGATGATCATCTTGCTCTTAGGCCTAACTCCTCCTATTCCTCTAAATCCAATAATTTCATCTCAACAACAATTAACTCTGAGGCTGAACCATTATTAACGTTGGCTCTGTCCCGTGAGAGTTTCCGGCAGCAGGTAGTCAAAGTTCCCCAAAACATAGGACACAACAAAGTCTCCTGCGAGGACCCTCTTGAACAGACTTCGCCTCACAGCGCTGTTTCCTCCTTCTCCAGCGGCAGGGTCAAGAGGGAGAGGGACCTTAGCTGCGAAGAAGTGGAGGCAACAGAGATAGAGAGGCTTTCTTCACGAGCCAGCGACGAAGAAGAAGACGGCGCCACCGCCAGGAAGAAACTTAGGCTCACAAAAGAACAATCTGCTTTGCTAGAAGAAAGCTTCAAACAGCATAGCACCCTCAATCCCAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAATCTACGGGCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACGAAGCTGAAGCAGACAGAGGTGGACTGCGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGACGAGAACAGGCGGTTACAGAAGGAGTTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCTTTGTACATGCCTATGCCTGCGGCAACCCTCACCATGTGCCCCTCTTGTGAGAGGCTCGGCGGTGGCGTCAACGGTGGCGCTTCCCCTAAGACACCCTTCTCCATGGCTCCTAAGCCTCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 897 0.505 MGLDHDAGTSNSGLQLILGLALTATPTSSPSISNKLDHDDHLALRPNSSYSSKSNNFISTTINSEAEPLLTLALSRESFRQQVVKVPQNIGHNKVSCEDPLEQTSPHSAVSSFSSGRVKRERDLSCEEVEATEIERLSSRASDEEEDGATARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGGVNGGASPKTPFSMAPKPHFFNPFANPSAAC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5535g00002 298 Coils Coil 214 244 - -
Mupr5535g00002 298 Pfam Homeobox associated leucine zipper 208 242 IPR003106 GO:0006355|GO:0043565
Mupr5535g00002 298 ProSiteProfiles 'Homeobox' domain profile. 148 208 IPR001356 GO:0003677
Mupr5535g00002 298 FunFam Homeobox-leucine zipper protein 18 138 213 - -
Mupr5535g00002 298 Pfam Homeodomain 152 206 IPR001356 GO:0003677
Mupr5535g00002 298 Gene3D - 144 213 - -
Mupr5535g00002 298 SMART HOX_1 150 212 IPR001356 GO:0003677
Mupr5535g00002 298 SMART halz 208 251 IPR003106 GO:0006355|GO:0043565
Mupr5535g00002 298 MobiDBLite consensus disorder prediction 98 114 - -
Mupr5535g00002 298 ProSitePatterns 'Homeobox' domain signature. 183 206 IPR017970 GO:0000981|GO:0006355
Mupr5535g00002 298 SUPERFAMILY Homeodomain-like 144 209 IPR009057 -
Mupr5535g00002 298 CDD homeodomain 152 209 IPR001356 GO:0003677
Mupr5535g00002 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 50 270 - -
Mupr5535g00002 298 MobiDBLite consensus disorder prediction 95 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5535g00002 Mupr-Chr5535 12002 13189 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5535g00002 1 298 Homeobox Transcription Factor Family AT4G37790 58.199 4.12e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mupr5535g00002 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5535g00002 K09338 - gmx:100807123 413.69