Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5532g00002 ATGGAGGGTGGTTCTAACGAGGTTTCTAGTGTGATGGGTTTTGGAGAGCATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCCATTAAATCCTAATCTTAATAATCCCAATCCTAATGAACACACAAACACCAACACCAACACTCTCTTCCTTCCCATGCCTTGTCCTAATAATCTCCACCTAAACCGCAATAACCACAACTCCGACGCCACTGAGTTAGGGTATTTCATGGAGATCCACAACAACAACGATGGAAGCTCCTCTTCTTCTTCTTCTTCCTGTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCTGAAGTGGTGGCAAGATTAGAAGAAGTATGTGCTTCTGCTGCAGTGACAATGGCCGGAGGAACAGCCCGCATCGGCGAGGATCCGGCGTTGGATCAGTTCATGGAGGCTTACTGCGAGATGCTGATCAAGTACGAGCAAGAGCTCTCTAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTTAAATCTCTTACTATTTCTTCATCTTCCGACACTGGTGGTGATAGGAATGGATCATCTGAAGAAGTTGATGTACAAAACAACTTAATAGATCCGCAGGCAGAAGACCAAGAACTGAAAGGTCAACTGTTACGGAAGTACCGAGGATACCTAGGCAGTTTGAAGCAGGAATTCACCAAAAAGAGGAAGAAAGGGAAACTACCCAAAGAGGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAAAAGCTGGCTCTTGCGGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAACCCATCCACACTACTACATGGAAAATGTTATGGCCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTAA 1071 0.4603 MEGGSNEVSSVMGFGEHTSSSGVCPMMMMPLVTSHHAGHHPLNPNLNNPNPNEHTNTNTNTLFLPMPCPNNLHLNRNNHNSDATELGYFMEIHNNNDGSSSSSSSSCVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEVCASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSSDTGGDRNGSSEEVDVQNNLIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMENVMANPFPMDLSHTML 356
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mupr5532g00002 356 SMART KNOX2_2 155 206 IPR005541 GO:0003677|GO:0005634
Mupr5532g00002 356 MobiDBLite consensus disorder prediction 40 58 - -
Mupr5532g00002 356 ProSiteProfiles ELK domain profile. 238 258 IPR005539 GO:0003677
Mupr5532g00002 356 Pfam KNOX1 domain 108 146 IPR005540 GO:0003677|GO:0005634
Mupr5532g00002 356 MobiDBLite consensus disorder prediction 207 229 - -
Mupr5532g00002 356 FunFam Homeobox protein knotted-1-like 2 263 325 - -
Mupr5532g00002 356 SMART ELK_2 238 259 IPR005539 GO:0003677
Mupr5532g00002 356 Pfam ELK domain 238 258 IPR005539 GO:0003677
Mupr5532g00002 356 ProSiteProfiles 'Homeobox' domain profile. 258 321 IPR001356 GO:0003677
Mupr5532g00002 356 Pfam Homeobox KN domain 278 317 IPR008422 GO:0003677|GO:0006355
Mupr5532g00002 356 SUPERFAMILY Homeodomain-like 260 335 IPR009057 -
Mupr5532g00002 356 ProSitePatterns 'Homeobox' domain signature. 296 319 IPR017970 GO:0000981|GO:0006355
Mupr5532g00002 356 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 327 - -
Mupr5532g00002 356 SMART KNOX1_2 106 150 IPR005540 GO:0003677|GO:0005634
Mupr5532g00002 356 Pfam KNOX2 domain 159 205 IPR005541 GO:0003677|GO:0005634
Mupr5532g00002 356 MobiDBLite consensus disorder prediction 35 58 - -
Mupr5532g00002 356 Gene3D - 263 325 - -
Mupr5532g00002 356 SMART HOX_1 260 325 IPR001356 GO:0003677
Mupr5532g00002 356 CDD homeodomain 270 322 IPR001356 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mupr5532g00002 Mupr-Chr5532 28498 32918 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5532g00002 89 356 Homeobox Transcription Factor Family AT1G62360 76.655 3.37e-133 383
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mupr5532g00002 KNOX2 6.9e-22 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5532g00002 - - gmx:100127401 588.571