LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5532g00002	ATGGAGGGTGGTTCTAACGAGGTTTCTAGTGTGATGGGTTTTGGAGAGCATACAAGTAGTAGTGGGGTTTGTCCAATGATGATGATGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCCATTAAATCCTAATCTTAATAATCCCAATCCTAATGAACACACAAACACCAACACCAACACTCTCTTCCTTCCCATGCCTTGTCCTAATAATCTCCACCTAAACCGCAATAACCACAACTCCGACGCCACTGAGTTAGGGTATTTCATGGAGATCCACAACAACAACGATGGAAGCTCCTCTTCTTCTTCTTCTTCCTGTGTCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCTGAAGTGGTGGCAAGATTAGAAGAAGTATGTGCTTCTGCTGCAGTGACAATGGCCGGAGGAACAGCCCGCATCGGCGAGGATCCGGCGTTGGATCAGTTCATGGAGGCTTACTGCGAGATGCTGATCAAGTACGAGCAAGAGCTCTCTAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTTAAATCTCTTACTATTTCTTCATCTTCCGACACTGGTGGTGATAGGAATGGATCATCTGAAGAAGTTGATGTACAAAACAACTTAATAGATCCGCAGGCAGAAGACCAAGAACTGAAAGGTCAACTGTTACGGAAGTACCGAGGATACCTAGGCAGTTTGAAGCAGGAATTCACCAAAAAGAGGAAGAAAGGGAAACTACCCAAAGAGGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAAAAGCTGGCTCTTGCGGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAACCCATCCACACTACTACATGGAAAATGTTATGGCCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTAA	1071	0.4603	MEGGSNEVSSVMGFGEHTSSSGVCPMMMMPLVTSHHAGHHPLNPNLNNPNPNEHTNTNTNTLFLPMPCPNNLHLNRNNHNSDATELGYFMEIHNNNDGSSSSSSSSCVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEVCASAAVTMAGGTARIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSSDTGGDRNGSSEEVDVQNNLIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMENVMANPFPMDLSHTML	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5532g00002	356	SMART	KNOX2_2	155	206	IPR005541	GO:0003677\|GO:0005634
	Mupr5532g00002	356	MobiDBLite	consensus disorder prediction	40	58	-	-
	Mupr5532g00002	356	ProSiteProfiles	ELK domain profile.	238	258	IPR005539	GO:0003677
	Mupr5532g00002	356	Pfam	KNOX1 domain	108	146	IPR005540	GO:0003677\|GO:0005634
	Mupr5532g00002	356	MobiDBLite	consensus disorder prediction	207	229	-	-
	Mupr5532g00002	356	FunFam	Homeobox protein knotted-1-like 2	263	325	-	-
	Mupr5532g00002	356	SMART	ELK_2	238	259	IPR005539	GO:0003677
	Mupr5532g00002	356	Pfam	ELK domain	238	258	IPR005539	GO:0003677
	Mupr5532g00002	356	ProSiteProfiles	'Homeobox' domain profile.	258	321	IPR001356	GO:0003677
	Mupr5532g00002	356	Pfam	Homeobox KN domain	278	317	IPR008422	GO:0003677\|GO:0006355
	Mupr5532g00002	356	SUPERFAMILY	Homeodomain-like	260	335	IPR009057	-
	Mupr5532g00002	356	ProSitePatterns	'Homeobox' domain signature.	296	319	IPR017970	GO:0000981\|GO:0006355
	Mupr5532g00002	356	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	52	327	-	-
	Mupr5532g00002	356	SMART	KNOX1_2	106	150	IPR005540	GO:0003677\|GO:0005634
	Mupr5532g00002	356	Pfam	KNOX2 domain	159	205	IPR005541	GO:0003677\|GO:0005634
	Mupr5532g00002	356	MobiDBLite	consensus disorder prediction	35	58	-	-
	Mupr5532g00002	356	Gene3D	-	263	325	-	-
	Mupr5532g00002	356	SMART	HOX_1	260	325	IPR001356	GO:0003677
	Mupr5532g00002	356	CDD	homeodomain	270	322	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr5532g00002	Mupr-Chr5532	28498	32918	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5532g00002	89	356	Homeobox Transcription Factor Family	AT1G62360	76.655	3.37e-133	383

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Mupr5532g00002		KNOX2	6.9e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5532g00002	-		-	gmx:100127401	588.571