Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5531g00003 ATGTTCCACCAATTCCAATTAAGGTTTCTTCCTCTATTTCTTTCTTTCTTTCCCTTTTTCCTTCCCAATATCTCTCAAATTCTGCTCTTAGGGTTTCGTAGAACGAACCAAATTCAATTAGGTAAACTCAATGTTTATGTAATTTACCATTGCTTGCCAGCTGAGAGAGTTTCTGTGCTACTCGTGATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAGGAATCAGCACTTAAAGCTGGAGTTGTCAAGCATGGTGTTGGTAAATGGCGCACAATACTGAAGGATCCTGAGTTTAGTAATGTCTTATTCCTACGGTCAAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGCTCTAGGGAAAAATCTAGGTTAGCAGTCAGAAGGGTGCATCATACCCCGAGACATGATGAGAACACTATGGCTATCACTCCTGTTGCTCCAAGTGATGAAGACATTGTTGATGTTAAGCCTCTTCAAATTTCTAGAGATATAGTGCAGGTTCCTGGTCCAAAGAGGTCTAATTTAAGTTTGGATAAACTAATAATGGAAGCAATCACTAGCTTGAAGGAGAATGGTGGTTCTAATAAGACAGCTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCGCCAGGCTTAAAAAGGATGTTGTCTGCAAAATTAAAGTTTTTGACAACAAATGGAAAACTGATCAAGGTAAATCGCAAGTACAGGATTGCACCTATTGCAGCATATTCTGACAGAAGAAGAAATTCATCCATATTATTATTGGATGCGAGGCAGAAAGCCTCTATGAAAATTGATAAGGATGAGACCAACATCCTTACTAAATCTCAGATAGATTTAGAGTTAGCAAAGATAAGGTCCATGACTCCACAAGAGGCAGCTGCATTTGCTTCTCGAGCAGTTGCTGAAGCAGAAGCCGCCATAGCAGAAGCAGAGGAGGCAGCAAAGGAGGCAGAGGCAGCAGAAGCTGATGCGGAGGCAGCACAAGCTTTTGCAGAAGCTACAACGAAATCAGCGAAAGGGAGAAGATCCCCAAAGAGGATCCATGCTTGA 1086 0.419 MFHQFQLRFLPLFLSFFPFFLPNISQILLLGFRRTNQIQLGKLNVYVIYHCLPAERVSVLLVMGAPKQKWTAEEESALKAGVVKHGVGKWRTILKDPEFSNVLFLRSNVDLKDKWRNLSVMANGWSSREKSRLAVRRVHHTPRHDENTMAITPVAPSDEDIVDVKPLQISRDIVQVPGPKRSNLSLDKLIMEAITSLKENGGSNKTAIAAFIEDQYWAPPGLKRMLSAKLKFLTTNGKLIKVNRKYRIAPIAAYSDRRRNSSILLLDARQKASMKIDKDETNILTKSQIDLELAKIRSMTPQEAAAFASRAVAEAEAAIAEAEEAAKEAEAAEADAEAAQAFAEATTKSAKGRRSPKRIHA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5531g00003 361 SMART sant 66 121 IPR001005 -
Mupr5531g00003 361 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 182 250 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr5531g00003 361 PANTHER SINGLE MYB HISTONE 4 63 356 IPR044597 GO:0003691
Mupr5531g00003 361 SMART h15plus2 180 245 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr5531g00003 361 Pfam Myb-like DNA-binding domain 67 118 IPR001005 -
Mupr5531g00003 361 Pfam linker histone H1 and H5 family 185 243 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mupr5531g00003 361 Gene3D - 64 121 - -
Mupr5531g00003 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 95 IPR017930 -
Mupr5531g00003 361 CDD SANT_TRF 68 118 - -
Mupr5531g00003 361 SUPERFAMILY Homeodomain-like 64 133 IPR009057 -
Mupr5531g00003 361 Gene3D - 179 258 IPR036388 -
Mupr5531g00003 361 Coils Coil 305 342 - -
Mupr5531g00003 361 SUPERFAMILY "Winged helix" DNA-binding domain 180 259 IPR036390 -
Mupr5531g00003 361 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Mupr5531g00003 361 FunFam Telomere repeat-binding factor 1 64 120 - -
Mupr5531g00003 361 MobiDBLite consensus disorder prediction 324 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5531g00003 Mupr-Chr5531 37796 43896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5531g00003 63 299 Single Myb Histone (SMH) Gene Family AT1G49950 60.744 8.15e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mupr5531g00003 Linker_histone 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5531g00003 K09422 - gmx:100780698 462.996