Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mupr5526g00002 | ATGGGCAAGATGCAAATCTTCGTGAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGAGTTCCGACACCATCGACAACGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGATGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCAACCCTCCACCTGGTCCTCCGTCTACGCGGTGGCATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAAAGCTCCGACACCATAGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAAGATGGGAGGACCCTTGCCGACTATAACATCCAGAAGGAGTCAACTCTCCACTTGGTGTTGCGTCTTCGCGGGGGTATGCAGATTTTCGTCAAGACCCTCACGGGTAAGACTATTACCCTTGAGGTCGAGAGTTCGGACACCATTGACAATGTGAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCTGACCAGCAGAGGTTGATTTTCGCTGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTCAGGGGTGGCATGCAAATTTTCGTTAAGACCCTTACGGGTAAGACTATTACCCTTGAGGTCGAGAGCTCTGACACCATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGCAGGACTCTTGCTGACTACAATATTCAGAAGGAGTCCACCCTTCACCTTGTTCTCCGTCTTCGTGGGGGATTTTAA | 927 | 0.5351 | MGKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF | 308 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mupr5526g00002 | 308 | CDD | Ubl_ubiquitin | 156 | 231 | - | - | |
| Mupr5526g00002 | 308 | SUPERFAMILY | Ubiquitin-like | 79 | 155 | IPR029071 | - | |
| Mupr5526g00002 | 308 | SMART | ubq_7 | 4 | 75 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | SMART | ubq_7 | 80 | 151 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | SMART | ubq_7 | 156 | 227 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | SMART | ubq_7 | 232 | 303 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | FunFam | Polyubiquitin 3 | 4 | 79 | - | - | |
| Mupr5526g00002 | 308 | ProSitePatterns | Ubiquitin domain signature. | 182 | 207 | IPR019954 | - | |
| Mupr5526g00002 | 308 | CDD | Ubl_ubiquitin | 4 | 79 | - | - | |
| Mupr5526g00002 | 308 | FunFam | Polyubiquitin 3 | 232 | 307 | - | - | |
| Mupr5526g00002 | 308 | SUPERFAMILY | Ubiquitin-like | 156 | 231 | IPR029071 | - | |
| Mupr5526g00002 | 308 | Pfam | Ubiquitin family | 158 | 229 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | Pfam | Ubiquitin family | 6 | 77 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | Pfam | Ubiquitin family | 82 | 153 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | Pfam | Ubiquitin family | 234 | 305 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | PANTHER | UBIQUITIN | 4 | 83 | - | - | |
| Mupr5526g00002 | 308 | Gene3D | - | 232 | 308 | - | - | |
| Mupr5526g00002 | 308 | Gene3D | - | 1 | 79 | - | - | |
| Mupr5526g00002 | 308 | Gene3D | - | 80 | 155 | - | - | |
| Mupr5526g00002 | 308 | Gene3D | - | 156 | 231 | - | - | |
| Mupr5526g00002 | 308 | ProSitePatterns | Ubiquitin domain signature. | 106 | 131 | IPR019954 | - | |
| Mupr5526g00002 | 308 | CDD | Ubl_ubiquitin | 232 | 307 | - | - | |
| Mupr5526g00002 | 308 | FunFam | Polyubiquitin 3 | 80 | 155 | - | - | |
| Mupr5526g00002 | 308 | SUPERFAMILY | Ubiquitin-like | 230 | 307 | IPR029071 | - | |
| Mupr5526g00002 | 308 | ProSiteProfiles | Ubiquitin domain profile. | 80 | 155 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | ProSiteProfiles | Ubiquitin domain profile. | 4 | 79 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | CDD | Ubl_ubiquitin | 80 | 155 | - | - | |
| Mupr5526g00002 | 308 | ProSiteProfiles | Ubiquitin domain profile. | 232 | 307 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | ProSitePatterns | Ubiquitin domain signature. | 258 | 283 | IPR019954 | - | |
| Mupr5526g00002 | 308 | ProSiteProfiles | Ubiquitin domain profile. | 156 | 231 | IPR000626 | GO:0005515 | |
| Mupr5526g00002 | 308 | FunFam | Polyubiquitin 3 | 156 | 231 | - | - | |
| Mupr5526g00002 | 308 | SUPERFAMILY | Ubiquitin-like | 3 | 79 | IPR029071 | - | |
| Mupr5526g00002 | 308 | PRINTS | Ubiquitin signature | 14 | 34 | IPR019956 | - | |
| Mupr5526g00002 | 308 | PRINTS | Ubiquitin signature | 35 | 55 | IPR019956 | - | |
| Mupr5526g00002 | 308 | PRINTS | Ubiquitin signature | 56 | 77 | IPR019956 | - | |
| Mupr5526g00002 | 308 | ProSitePatterns | Ubiquitin domain signature. | 30 | 55 | IPR019954 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mupr5526g00002 | Mupr-Chr5526 | 16059 | 17631 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mupr5526g00002 | 4 | 80 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.701 | 1.54e-48 | 157 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mupr5526g00002 | K08770 | - | sspl:121786442 | 592.423 |