Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5498g00002 ATGATATATCTCGAGCAAGAAATTTATTATAAGGTAGGGTATCCAAAATCTGCTTCTGTGGTGTCACAGCCGGAAACCATGGGTCGTATGCATAGTCGTGGTAAGGGTATTTCCTCCTCTGCTTTGCCATACAAGAGGACTCCCCCAACCTGGCTCAAGATCTCTTCCCAAGACGTTGAAGAGAATATATGCAAGTTCGCGAAGAAGGGTTTGACGCCGTCTCAGATTGGTGTGATTCTCCGAGACTCTCACGGCATTGCTCAGGTGAAGAGTGTCACCGGCAGCAAAATCCTCCGCATCCTCAAAGCTCACGAGTGGTTTATTGCAGCACTTGCGCCTGAGATTCCGGAGGATCTTTACCATTTGATAAAGAAAGCGGTTTCAATCCGGAAGCATCTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTCAGACTCATCCTCGTCGAGAGCAGAATCCACCGACTTGCTCGTTATTACAAAAAAACTAAGAAGCTTCCCCCTCGAATCAACAACTGCCAGCACCCTGGTTGCTTAGGGAATGTATCAGCTCATGCTTTTGCTGCGTTGCTAGACTAG 579 0.4767 MIYLEQEIYYKVGYPKSASVVSQPETMGRMHSRGKGISSSALPYKRTPPTWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHEWFIAALAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPRINNCQHPGCLGNVSAHAFAALLD 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5498g00002 192 SUPERFAMILY S15/NS1 RNA-binding domain 93 169 IPR009068 -
Mupr5498g00002 192 Pfam Ribosomal S13/S15 N-terminal domain 27 86 IPR012606 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 Pfam Ribosomal protein S15 114 164 IPR000589 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 ProSitePatterns Ribosomal protein S15 signature. 129 159 IPR000589 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 Gene3D - 61 107 - -
Mupr5498g00002 192 FunFam 40S ribosomal protein S13 114 172 - -
Mupr5498g00002 192 CDD Ribosomal_S15p_S13e 96 169 IPR000589 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 SMART Ribosomal_S13_N_2 27 86 IPR012606 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 FunFam 40S ribosomal protein S13 61 107 - -
Mupr5498g00002 192 SMART Ribosomal_S15_2 96 179 IPR000589 GO:0003735|GO:0005840|GO:0006412
Mupr5498g00002 192 Gene3D - 113 172 - -
Mupr5498g00002 192 PANTHER RIBOSOMAL PROTEIN S15P/S13E 27 170 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5498g00002 Mupr-Chr5498 7631 9618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5498g00002 27 168 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 88.732 5.17e-88 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5498g00002 K02953 - zju:107414706 265.003