LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr5488g00003	ATGCTTCAGATTCGGCTTAGTAAGGCTCCTGCATCAGAAGGGGCCGCAGGGGTGAAGCTGTCGCCGGTCGAGACTGTTACAGTTGCGTGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACTGCTGCTTCCCTTGTTAAAACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGTGAGCGAGTTCATTTCTGTGTTCGCTGTGATTTCCCAATCGCCATTTATGGACGGCTGAGCCCTTGTGAGCATGCCTTTTGTCTGGATTGTGCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCAGCTCCTCATTGCCTCAAGTCTTTCTTGAAGCAAGCTGAATTTGAATCTCATATCCAAGACAGCCACGCCAACCTTCTTCGACCGAATACAGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTCGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGCTCAAATTCCCAGCAACATGATCTGGAAGACAAAACTCGTAGACAGCCACCAAGAGAGCAGCCACCTTCAAGGCAAACCCTGCAATCAAAGCCACCATATTTTGGTCAACAACATCACCCTTCAGATAGCATGTCTGGCTCTGTTGGAGGTGGACAACAGGGCTTTCATCAACAGAGTTTTGACATGCAGCATCCCCCGCAAGAATCTTCCCAGTTCGCTGACAGGCAACAAGCAGTTGGTCCAGAGACCCCATTTTCTGAGTATCCAACAATGCACCCTGCACAACCTTCCAATGTCCCCTCACTCGTTACTTCAAACCCAATGCTGAACCCTCCTATGCCATTTGGTTACCCCCCTTACCCAAACGAACGAGCTCAACCATTTTATGCTGCTCCATATGATATGCCTAGGCAGGACTCAGGTGCTGATATAGGTGGGGACCAAAGTTCATTACTGGGTTTTCCACAAGGTGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAGGACAAGGTGGTATGGTTGTGGATCCAAGGGATGCCAAAGGTATATTGGCACCACAGCCCATGCCCCTCCCACCACCACCTCCACCTCCACCCCACATGTCACATTTGAAACAGAATTACTACTCTGGGGAGCTTGGACATGATGGCCAGGGTTATGGGTGGCAGCATGATAACCGTGATAGCTTTGGTAGCCAAGGC	1308	0.4954	MLQIRLSKAPASEGAAGVKLSPVETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKQAEFESHIQDSHANLLRPNTDKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEDKTRRQPPREQPPSRQTLQSKPPYFGQQHHPSDSMSGSVGGGQQGFHQQSFDMQHPPQESSQFADRQQAVGPETPFSEYPTMHPAQPSNVPSLVTSNPMLNPPMPFGYPPYPNERAQPFYAAPYDMPRQDSGADIGGDQSSLLGFPQGGPNFPGNYPQPWNSGIGGVPFEQGQGGMVVDPRDAKGILAPQPMPLPPPPPPPPHMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGSQG	436

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr5488g00003	436	MobiDBLite	consensus disorder prediction	376	436	-	-
	Mupr5488g00003	436	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	69	120	IPR013083	-
	Mupr5488g00003	436	CDD	RING-HC_HAKAI-like	70	119	IPR040380	-
	Mupr5488g00003	436	FunFam	E3 ubiquitin-protein ligase Hakai	69	123	-	-
	Mupr5488g00003	436	ProSitePatterns	Zinc finger C2H2 type domain signature.	125	148	IPR013087	-
	Mupr5488g00003	436	MobiDBLite	consensus disorder prediction	151	276	-	-
	Mupr5488g00003	436	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED	1	426	IPR040383	GO:0016567\|GO:0061630
	Mupr5488g00003	436	MobiDBLite	consensus disorder prediction	209	267	-	-
	Mupr5488g00003	436	MobiDBLite	consensus disorder prediction	166	195	-	-
	Mupr5488g00003	436	MobiDBLite	consensus disorder prediction	388	404	-	-
	Mupr5488g00003	436	ProSitePatterns	Zinc finger RING-type signature.	88	97	IPR017907	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr5488g00003	1	435	C2H2 Transcription Factor Family	AT5G01160	45.067	6.55e-111	329

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr5488g00003	K15685		-	gmx:100817582	768.074