Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5485g00002 ATGAGTGGCCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCTTCTGATATACGAGAGTCAGAAATTGAAGATCTATTTTACAAGACCCTGTTTACCTTTGAGCAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGGGGTAGAGATGGATACAACTTTGATGGTTGTCGGTTAAGGGTGGAACTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGGCCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGGGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTATACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGAAGTCCAAAAAGGCTTTTAGACATTACTTATACTTATGGAGAGCCTGTTGTTTCGTTCTGCAGTAGATCTTTGGAGCGTTCCGTGTCTAGATCTAGATCTCGATCTCGATCAGCCTCGCCAATCAAATCTTCCAGGCCAAGATCACGTTCACGTTCTGGATCTCCTCGCCAGGTGCTAATAGTAATTTCAAAACCAATGGATACTTAA 855 0.4538 MSGRFSRTIYVGNLPSDIRESEIEDLFYKTLFTFEQYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSRSRSPSRSRSPKRLLDITYTYGEPVVSFCSRSLERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLIVISKPMDT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5485g00002 284 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 270 - -
Mupr5485g00002 284 MobiDBLite consensus disorder prediction 201 220 - -
Mupr5485g00002 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 83 IPR000504 GO:0003723
Mupr5485g00002 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 188 IPR000504 GO:0003723
Mupr5485g00002 284 FunFam serine/arginine-rich splicing factor SR34A-like 124 201 - -
Mupr5485g00002 284 CDD RRM2_SF2_plant_like 124 199 - -
Mupr5485g00002 284 Gene3D - 124 201 IPR012677 -
Mupr5485g00002 284 MobiDBLite consensus disorder prediction 245 284 - -
Mupr5485g00002 284 MobiDBLite consensus disorder prediction 249 273 - -
Mupr5485g00002 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Mupr5485g00002 284 MobiDBLite consensus disorder prediction 88 114 - -
Mupr5485g00002 284 Gene3D - 2 122 IPR012677 -
Mupr5485g00002 284 SMART rrm1_1 8 85 IPR000504 GO:0003723
Mupr5485g00002 284 SMART rrm1_1 125 194 IPR000504 GO:0003723
Mupr5485g00002 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 89 IPR000504 GO:0003723
Mupr5485g00002 284 SUPERFAMILY RNA-binding domain, RBD 6 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5485g00002 Mupr-Chr5485 37148 42217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5485g00002 8 208 Eukaryotic Initiation Factors Gene Family AT4G34110 22.010 2.82e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5485g00002 K12890 - gmx:100800653 360.918