Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5477g00001 ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTCGAGTCCCTCGAGGACGATTTCTACAGTGGTGAGACCGAGGATGCTCCCATGGATTACTACAGTGACTACGACGACGAAGCCGATGATTACTTCGACGATGCCGATGATTCTGACCGAGTCGAGTCTCGCCGCCCCGAGGAATTGGATATCCGACAAAGGCAGGAAGATGACATCACTAGAGTAGCGGCAGTTCTTTCCATACCGCGATTTTGTGTGAATGTATATTTTGATGCTGCCTTGTATGATATGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGAAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCTGAATTCTAATCCTAGAGAGTTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTGCACGGGTTGAATCTGCTGCTTGTGGTCATCCTTACTGCCATTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTTTTAGCATCTGATGAAGATAAAGGGAAGTATGACCGTTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTTTCTTGTCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTGGACTGTGGCACTGTAGCAAAGTGGATTTTGAAAAACAGTGCAGAATCCGAAAACATGAACTGGTATAGAATATATTTTGACGTCTGTAGAATGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGCTATGTCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCCTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTAATTCCTTTGGTGTAAAGTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGCGACACTCAGTGCCAGCCTGAATCACAGCTTAAGTTTATAACGGAGGCCTGGTTACAGATAGTTGAATGCAGACGGGTGCTGAAATGGACATATTCATATGGGTTCTATTTACCAGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTGCAAGGTGAAGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTCAGTGCTGATGGCCCATCTAGAGAATTCAATGACTTCCGCACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAAAATTTGGTGAGGGCATTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCGAGCAAAGCAACAAGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGGGGAAAAGCAACTATTCGAACTAGCATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAACATTGTACCTATGCAAATGTTAGGTCTGCCACCACATGCCAGATGTGCAATCAACAGCGTCGATGA 1758 0.438 MDSEDDMHDANDVESLEDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRVESRRPEELDIRQRQEDDITRVAAVLSIPRFCVNVYFDAALYDMSVSKVHDAWFADEDQVRKTVGLLEKPVFLNSNPREFTCGICFEMYPRARVESAACGHPYCHSCWAGYIGTSINDGPGCLVLRCPDPTCGAAVGQDMINLLASDEDKGKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWYRIYFDVCRMILANSKPCPKCKRPIEKNQGLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSNSFGVKSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLSADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTSISSRMTDDNHWSCEHCTYANVRSATTCQMCNQQRR 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5477g00001 585 CDD BRcat_RBR_ANKIB1 210 274 - -
Mupr5477g00001 585 ProSiteProfiles Zinc finger RING-type profile. 134 178 IPR001841 -
Mupr5477g00001 585 Gene3D - 261 516 - -
Mupr5477g00001 585 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 72 431 IPR031127 GO:0004842|GO:0016567
Mupr5477g00001 585 SUPERFAMILY Ran binding protein zinc finger-like 557 584 IPR036443 -
Mupr5477g00001 585 SUPERFAMILY RING/U-box 129 215 - -
Mupr5477g00001 585 MobiDBLite consensus disorder prediction 1 61 - -
Mupr5477g00001 585 SMART ibrneu5 203 265 IPR002867 GO:0008270
Mupr5477g00001 585 Gene3D - 555 585 - -
Mupr5477g00001 585 SMART zf_4 559 583 IPR001876 -
Mupr5477g00001 585 SUPERFAMILY RING/U-box 204 272 - -
Mupr5477g00001 585 FunFam RBR-type E3 ubiquitin transferase 266 516 - -
Mupr5477g00001 585 MobiDBLite consensus disorder prediction 517 535 - -
Mupr5477g00001 585 ProSiteProfiles TRIAD supradomain profile. 130 375 IPR044066 -
Mupr5477g00001 585 ProSitePatterns Zinc finger RanBP2-type signature. 561 580 IPR001876 -
Mupr5477g00001 585 MobiDBLite consensus disorder prediction 1 48 - -
Mupr5477g00001 585 Pfam IBR domain, a half RING-finger domain 204 265 IPR002867 GO:0008270
Mupr5477g00001 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 215 IPR013083 -
Mupr5477g00001 585 ProSiteProfiles Zinc finger RanBP2 type profile. 557 585 IPR001876 -
Mupr5477g00001 585 MobiDBLite consensus disorder prediction 517 553 - -
Mupr5477g00001 585 FunFam RBR-type E3 ubiquitin transferase 128 217 - -
Mupr5477g00001 585 Pfam Ariadne domain 346 513 IPR045840 -
Mupr5477g00001 585 CDD RING-HC_ARI6-like 131 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5477g00001 Mupr-Chr5477 5678 12005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5477g00001 17 584 ARIADNE family AT1G65430 63.455 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5477g00001 K11968 - gmx:100810427 1040.02