Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5462g00006 ATGGGTGTTTCACAAACTCCAACCCCCTCTCCACATCTCTATCCACAAGAACTTCAGCTTAAACTTTACCAGGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAACGGAGGGCTTCCTCTCTCTCATCATCCCCACCTCTCCACATACTTCCCAGTACTGCTAATCCACAAACTACGTATCCTTATCCTTCACCACCTTGCCGTTTAGATCTGACTGTGCAATTTCTGGACAAACTTCCAAGAATTTTATTTGATGAGGATTTGAGAACAAGAGATTCAGTATGTTGTGTATGCCTAGGAGAATTTGAGCTGAAGGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAAGCTGCATAAGTAGCTGGCTCCAATCAAACTCCACGTGTCCACTTTGTAGATGCTCCATCATTCCCTCTACCAAGTTCCTTAATCCAGCACCACCTATTGTATCAGAATCACCCCAGCAAAGTGGTATTTCAGGCTCTTCACCACACATCATATCATTGCCTCATCAACAAGAAGATGATGAAGTTGGTGCTTCCACAAATACTACCAATTTTCAAGAGAATGGTACT 627 0.4179 MGVSQTPTPSPHLYPQELQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSSPPLHILPSTANPQTTYPYPSPPCRLDLTVQFLDKLPRILFDEDLRTRDSVCCVCLGEFELKEELLQIPYCKHVFHISCISSWLQSNSTCPLCRCSIIPSTKFLNPAPPIVSESPQQSGISGSSPHIISLPHQQEDDEVGASTNTTNFQENGT 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5462g00006 209 CDD RING-H2_EL5-like 108 150 - -
Mupr5462g00006 209 SMART ring_2 108 149 IPR001841 -
Mupr5462g00006 209 Pfam Ring finger domain 108 150 IPR001841 -
Mupr5462g00006 209 SUPERFAMILY RING/U-box 86 160 - -
Mupr5462g00006 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
Mupr5462g00006 209 PANTHER RING-H2 FINGER PROTEIN ATL16 9 194 IPR044600 GO:0016567|GO:0016740
Mupr5462g00006 209 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Mupr5462g00006 209 MobiDBLite consensus disorder prediction 166 209 - -
Mupr5462g00006 209 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 77 155 - -
Mupr5462g00006 209 MobiDBLite consensus disorder prediction 164 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5462g00006 Mupr-Chr5462 60149 61776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5462g00006 4 180 C3H Transcription Factor Family AT4G10150 35.714 8.48e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5462g00006 K19039 - gmx:100806499 323.939