Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5452g00004 ATGGAATCTCTCTCTCACTTATCTTCTGTTCCCAAGCCCATACACCTCACCACGGTCTCATGCGCTATATTTATGACTCTAGAGACCTTTCCCGCTTCCCAATTCTTTTTAAGAGCCCTTCTCTTCCAAACTCCTCTCATCGACTACAAGTTCCAAACTCATACCAGTCTAGAAGAGATGGGAGATGAGGAAATGGTAGCCAAAGTTGGGGAAAGCCAAAGAGAAGATGCATCAAGAGTTTTTCCATGTCTATTCTGTTCAAGAAAGTTTTACAGTTCTCAAGCCTTAGGAGGACACCAAAATGCTCACAAGAAAGAAAGAACAGCTGCAAGGAAGGCCAAGAAGGCTTCTAGGTACTCGTGTGTTTCCTTCCCTACCCTACTGCCAAACCCTGTGGTTTTTGCTCCAACCCATCTAGACATTTTGAATCCTTCAATGTTCATCGCTGTCCATGCAGCAAAACTCCCTTATCTCCCAAGCCACCAAATTTCAGAACAATTTGGATCAAATGGTGCACCCAGATTTGGCAATGCTCTATTCTATGGGGAACGTTGTTCGAAAAATTGGTTCCACCATGATGGGAAGAGCTCTAACTTTAGCTGGGGGAACACATCTCAGCATATACCATTGAAAAGTAACAACCACAACCTTGGAATTTCGAATAATGATACAGAGAAAGATCAAAAGCTTGATTTATCTCTCCATTTGTAG 711 0.4276 MESLSHLSSVPKPIHLTTVSCAIFMTLETFPASQFFLRALLFQTPLIDYKFQTHTSLEEMGDEEMVAKVGESQREDASRVFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKKASRYSCVSFPTLLPNPVVFAPTHLDILNPSMFIAVHAAKLPYLPSHQISEQFGSNGAPRFGNALFYGERCSKNWFHHDGKSSNFSWGNTSQHIPLKSNNHNLGISNNDTEKDQKLDLSLHL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5452g00004 236 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Mupr5452g00004 236 PANTHER ZINC FINGER PROTEIN JAGGED 73 236 IPR045320 GO:0003700
Mupr5452g00004 236 SUPERFAMILY beta-beta-alpha zinc fingers 79 108 IPR036236 -
Mupr5452g00004 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Mupr5452g00004 236 Gene3D Classic Zinc Finger 59 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5452g00004 Mupr-Chr5452 18668 19566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5452g00004 51 236 C2H2 Transcription Factor Family AT5G48890 35.354 3.77e-17 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5452g00004 - - gmx:100527084 295.819