Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5452g00003 ATGGTGGTCATAGAGCAGGAAGAGAGCGAGCATCGAAACGCGAACCCCTCCGTCGTCGGCAACGACGCTTCCGATGGCTTCGAAACCGCCAGCGACACCGATCTCGGCAGCGACGGCGAAGAAGGCGGAGCCGGCAGCCGGGAAGAACAGAATCGCCCCAAGAAACACCACCACCAGCAGACAGAGCAAGAGCCGGAACACGATGTTCCTCCGAGCACCGGATCATCCGAGAATGCCTTGATCAATGAAGAAGAAACGAGACAGAAAGCTATGGATCAAGCAAATGAAGCAAAGGTAGAAGGGAACAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCTTTGTCACAATATGAACTTGCTTTACAAGTAGCACCGGACATGCCTTCATCTGTGGAAATACGTTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTCAAACTGGGAAAATATGAGAACACAATTAAAGAATGCACAAAAGCATTAGAACTGAACTCTGTGTACATTAAAGCTTTGGTAAGAAGAGGCGAGGCCCATGAAAAGCTAGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACCATTCGGCAACTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAAATGGGCAATTCTGTCTTGGGCCGCTTTGGGATGAGCATAGACAATTTCAAAGCAGTCAAAGATCCAAACACGGGTTCCTATTCTATCTCATTCCAACGGGTGCACTTGTTTGAGGAGTTGGATGTTGTAAAGTTGAAGTTACTTCACACTTTTTTGTATATTTGGAACTACATAAGCACAGCTTTACCTGAGGAATATCAGAACAAATGGTGGTACAACAGTGTAACAGAAGAGAGAATAGCGGGCGAATTTAGAAAGCAGGGAACAACTGGTATGAGTTTGGAACTTGTAGTCGATGAGAGGAGTTTGGAAGAGAAGGGCTCTTAA 1026 0.4513 MVVIEQEESEHRNANPSVVGNDASDGFETASDTDLGSDGEEGGAGSREEQNRPKKHHHQQTEQEPEHDVPPSTGSSENALINEEETRQKAMDQANEAKVEGNKLFVDGKYEEALSQYELALQVAPDMPSSVEIRSICHSNRGVCFLKLGKYENTIKECTKALELNSVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRQLEPLAAEKREKMKEEMIGKLKEMGNSVLGRFGMSIDNFKAVKDPNTGSYSISFQRVHLFEELDVVKLKLLHTFLYIWNYISTALPEEYQNKWWYNSVTEERIAGEFRKQGTTGMSLELVVDERSLEEKGS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5452g00003 341 Gene3D Tetratricopeptide repeat domain 52 233 IPR011990 GO:0005515
Mupr5452g00003 341 SMART tpr_5 135 168 IPR019734 GO:0005515
Mupr5452g00003 341 SMART tpr_5 94 127 IPR019734 GO:0005515
Mupr5452g00003 341 SMART tpr_5 169 202 IPR019734 GO:0005515
Mupr5452g00003 341 Pfam Tetratricopeptide repeat 137 165 IPR001440 GO:0005515
Mupr5452g00003 341 ProSiteProfiles TPR repeat profile. 169 202 IPR019734 GO:0005515
Mupr5452g00003 341 Coils Coil 80 100 - -
Mupr5452g00003 341 MobiDBLite consensus disorder prediction 1 77 - -
Mupr5452g00003 341 Pfam Tetratricopeptide repeat 170 202 IPR013105 -
Mupr5452g00003 341 MobiDBLite consensus disorder prediction 41 65 - -
Mupr5452g00003 341 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 5 266 - -
Mupr5452g00003 341 ProSiteProfiles TPR repeat profile. 94 127 IPR019734 GO:0005515
Mupr5452g00003 341 MobiDBLite consensus disorder prediction 13 31 - -
Mupr5452g00003 341 SUPERFAMILY TPR-like 89 212 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5452g00003 Mupr-Chr5452 12629 19458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5452g00003 69 225 Calmodulin-binding Proteins AT3G25230 35.838 8.91e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5452g00003 K24926 - gmx:100808386 435.647