Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr544g00001 ATGGGGTTTGAGAAAATCATGGGCACTGGTGGAAATGACCTTAAAGCCCAAATAAGCCCTAGTTTCCTCAAATCTTCAGTGTGCACATCAACAACACTAGCAGTACCAACACCACCTCTCCTGCCTCCCGGAGCCATGATCGCCGCCGATTCCGATGCCGCTCCGTCGCGCCAGCTGTCGCAGAAGGAGGCGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTCCAAATGGAACGCTATGTCTTCAAGCGCCGCACCGACGGTATATACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAGCTTGCTGCAAGGATTATTGTGGCCATTGAGAATCCACAGGACATAATTGTTCAGTCGGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAATACACTGGTGCTCATGCGATTGCAGGAAGGCACACTCCCGGAACATTCACTAATCAGTTGCAGACATCCTACAATGAGCCTCGTCTTCTAATTCTAACTGATCCAAGAACAGATCATCAGCCTATCAAGGAAGGTGCTCTTGGAAATATTCCGACTATTGCTTTTTGTGATACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATAAGGGGAAACATAGCATTGGTTGTCTCTTTTGGCTATTAGCTAGGATGGTGCTGCAGATGCGGGGTACTATTCGTCCAGGGCATAAGTGGGATATAATGGTGGATTTATTCTTCTATAGAGAACCCGAGGAGGCCAAGCAACAAGAGGAAGATGAAGCACCACCTGCCCAAGATTTTGCCATTTCAGACTTCAATGCTGCTGGCCAATGGCCTGCTACAGTCGATCAACCCTGGACTGAAGAAGCTCCACAACCAATCCCAGCAGTTCCTACTAACTGGACCCCAGAAGCAGCTGGTACAGGAGATTGGGGTGAGTCTGTTCCAGCACCAGCTCCACAGGTTGCTGCTGTGCCTGCAGTCCAAACTGTTCCTGCTACTGGCTGGGAGTAG 1038 0.4981 MGFEKIMGTGGNDLKAQISPSFLKSSVCTSTTLAVPTPPLLPPGAMIAADSDAAPSRQLSQKEADIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDIMVDLFFYREPEEAKQQEEDEAPPAQDFAISDFNAAGQWPATVDQPWTEEAPQPIPAVPTNWTPEAAGTGDWGESVPAPAPQVAAVPAVQTVPATGWE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr544g00001 345 NCBIfam 30S ribosomal protein S2 61 257 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mupr544g00001 345 PANTHER 40S RIBOSOMAL PROTEIN SA 56 329 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mupr544g00001 345 CDD RPS2 69 235 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 66 84 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 187 198 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 145 162 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 96 105 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 170 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 PRINTS Ribosomal protein S2 signature 208 222 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 Gene3D - 65 270 - -
Mupr544g00001 345 SUPERFAMILY Ribosomal protein S2 61 251 IPR023591 -
Mupr544g00001 345 FunFam 40S ribosomal protein SA 65 271 - -
Mupr544g00001 345 Pfam Ribosomal protein S2 166 233 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 Pfam Ribosomal protein S2 69 164 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 Hamap 40S ribosomal protein SA [rps-0]. 53 297 IPR027498 GO:0003735|GO:0006412|GO:0015935
Mupr544g00001 345 ProSitePatterns Ribosomal protein S2 signature 2. 170 194 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mupr544g00001 345 MobiDBLite consensus disorder prediction 296 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr544g00001 Mupr-Chr544 1318 3811 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr544g00001 47 345 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 69.767 4.39e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr544g00001 K02998 - gmx:100786575 532.717