Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5445g00003 ATGGCAACTGAAGCACATGATGACTTTCCCAATATTAATGACCAAGGCACTTCTAGTAGAGTTCATAACGCAATTCAAAAGGATGTAGTGTCATCCGAAATAACCGAGGAACTCCCTAGTAGACATGCACATGGGAGAAGGAAAAACCTTATCTTAGAGATACCCACAAGAACGCTGGATGAAACAAGAGAGGATTTTATGAGAACAAATGAATCTCCAACTCAATCTCTTAGAAGCCAAATGAATGAGTTCCAAGGTCCCTCGTCTACAAAAAATAAATTAACTACTAAAACTCTTATTCCCAAGCTCAGTTTTAAATTTCACAACATGAGTTCAGATGTTGAAGAGGCTTCCATCCTAGCACTTGAAGATTCTTCTCCAGAGCCACTCCAAAAGTCTATGATTTCAAGAACATTATCGCCTGATGGGAAGAAAATATCATCCTTACCTATAACCCCAATTGCTCAGTCAAATCTGGAGTCTGAACATGGAGGGAACATTGCCTATCCAGCAACACATGTTAGAAAAGGACAGCAATTACCTATGCATCGCTCCCGTTCAGTTCCCGTGTTCAGCGAAGATGGCAACACAAATGTAGGTGGCATGTTTCGTATTGTTCCTACCACACCACGGTTTGCTGGGAGTATCGCCACAACATCTATGAAATCTCCACCTGAGGATACTGTTGAAAATGAGGATGGGGAAGATATTCTTGAAGAAGAAGCCGTCTGCAGAATTTGTTTAATTGAATTGGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTAGCACATCAAGAATGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAGGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTAAGAGTTCTAAATGGCCAGGCACTTAACTTGACAAGAAGCAGAAGTCAACAATACAGGCAAGGGAAAACCACTGCTTTTCTTGAGTATTCTTTATCTGAAAAAAACTTTCACAGGGTTTGGCAAAATGTTCCCATTCTTGTGATTATCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCATTGCCATTTCTCTCCCTTTTTCATGTATACTGGGTCTACTTGCAAGCATGACATCCACAATAATGGTGAGGAGTGAACATGTTTGGGCTTATGCAATTGTCCAGTTTGTTACGGTGGTTCTCGCTGGACGTCTTTCCTATTCACTGCTTAATAAGCAAGCTGTTCTATCTATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTAATGTGTGGAGCTTATATTCTTACTGAGTTTTTGAAGTGGAGAAGAAGATGGTTTGATCAGTTGAATCAACAGCATGGTTCCCAAGAGCTGGTACTGCCTCATCAATCATATTCATCTGCAGCCACTTATCAACCTCATACTGATTCTCAACATCATGAAAATAATATGACAGACACTGCAGTGCGTGTGGGCTGA 1521 0.4109 MATEAHDDFPNINDQGTSSRVHNAIQKDVVSSEITEELPSRHAHGRRKNLILEIPTRTLDETREDFMRTNESPTQSLRSQMNEFQGPSSTKNKLTTKTLIPKLSFKFHNMSSDVEEASILALEDSSPEPLQKSMISRTLSPDGKKISSLPITPIAQSNLESEHGGNIAYPATHVRKGQQLPMHRSRSVPVFSEDGNTNVGGMFRIVPTTPRFAGSIATTSMKSPPEDTVENEDGEDILEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCRQEVQNLPVTLLRVLNGQALNLTRSRSQQYRQGKTTAFLEYSLSEKNFHRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAIAISLPFSCILGLLASMTSTIMVRSEHVWAYAIVQFVTVVLAGRLSYSLLNKQAVLSILLATFTGFGAVMCGAYILTEFLKWRRRWFDQLNQQHGSQELVLPHQSYSSAATYQPHTDSQHHENNMTDTAVRVG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5445g00003 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 299 IPR013083 -
Mupr5445g00003 506 PANTHER OS02G0165000 PROTEIN 31 472 - -
Mupr5445g00003 506 MobiDBLite consensus disorder prediction 486 506 - -
Mupr5445g00003 506 MobiDBLite consensus disorder prediction 67 92 - -
Mupr5445g00003 506 SMART ringv_2 243 292 IPR011016 GO:0008270
Mupr5445g00003 506 SUPERFAMILY RING/U-box 240 295 - -
Mupr5445g00003 506 Pfam RING-variant domain 244 291 IPR011016 GO:0008270
Mupr5445g00003 506 ProSiteProfiles Zinc finger RING-CH-type profile. 236 298 IPR011016 GO:0008270
Mupr5445g00003 506 MobiDBLite consensus disorder prediction 69 92 - -
Mupr5445g00003 506 MobiDBLite consensus disorder prediction 10 24 - -
Mupr5445g00003 506 CDD RING_CH-C4HC3_MARCH 244 292 - -
Mupr5445g00003 506 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5445g00003 Mupr-Chr5445 11946 16414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5445g00003 174 298 C3H Transcription Factor Family AT2G37950 27.820 9.34e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5445g00003 - - gmx:100789854 728.398