Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5443g00006 ATGGATTCAAATGGGAGCCTTCGAGCTAACACCTGGGCAAGGCCGTCCTCCTTAACCTCTCCTGCGAGTGGTTTATCCTCAGATCCTCTTCCTTTCTCAAGTTTTGGTTTGCAGCAAAATCAACATAAATGGGATGATCCCTCAAATTCAGATTACGGGATCAGGGCAGAAGCATCTTTCAAAGAATTCAATCCGGCCTCCCAAACTCAGTCTCCGCTTCCTTGCAACTCAAACAATGAGATTGAATTCACTGATCAAGAAAACTGTCGTCCAAGTGAATCATCACATACCAGTACACTCCAAGATTGGGACCCCAGTGTGATGCTGAATAACCTGTCCTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCATTTAATTGTTCGTCAAAAAGGTAGTCTTCTCCCTTCTGTCAGGCCTAACCTTATAAACACTAGCTCATTGGCCGAACAGATTGATCAGCTTCGTGGGACTACTGTTCCTTCTGGGACCGGTGCGAGTAGCAGCTGTGTTCAACTCCAAAATAATAGTGGAAAACAATTGTCTGATCAGTCCATGCACACTGATCTACCTAACAATTGTGAAATGGAGCAAAACTACAATATGGTAGAGCATGAATTCAAAGATGAGGAAGATGCAGATGAAGGAGAAAACCTTGCTCCTGGTTCATACGAGATTTTACAGTTGGAAAAAGAAGAAATCCTTGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGCTTCAAGAGGGATGCAAATCTTAGAATGCACATGCGTGGCCATGGCGACGAGTACAAAACTGCTGCAGCACTTGCAAAACCACACAAAGAATCCGGGTCACCAAAGCTCATCAAGAGGTATTCCTGCCCCTATCCCGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAGCCTCTGAAGACTATCTTATGTGTCAAAAACCATTACAAAAGGACACATTGTGACAAGAGCTACACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCTGATCTAAAAACTCATGAAAAACACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTCTTCCAAGGTCACACACCAGCCATTCCCCTGGATGACAACACCAAAGGGGTAGCTGAGGCACCCATTCATGACAGCAAAGAAAACAGCAAGGTGGGGAATATGAACTTCTCTTTTGGATCAAATCCTTCAAATGCAAATGGAGTTCAAAATGTCATGGATGTGAAAGGCAATAGTGATGACCCTATCAATTATTTCTCATCATTGAACTTTGAAGCCAACTTTGGTGTGTTTAATGAATTCACCAGACCTCTATTTGATGACTCAGAAGGTTCATTCTCTTTTGTCATGCCTGGATCTTTTAAATCTGGAGGAGAATCAAGTTCTGACAATCTTTTGTAA 1467 0.4301 MDSNGSLRANTWARPSSLTSPASGLSSDPLPFSSFGLQQNQHKWDDPSNSDYGIRAEASFKEFNPASQTQSPLPCNSNNEIEFTDQENCRPSESSHTSTLQDWDPSVMLNNLSFLEEKIHQLQDLVHLIVRQKGSLLPSVRPNLINTSSLAEQIDQLRGTTVPSGTGASSSCVQLQNNSGKQLSDQSMHTDLPNNCEMEQNYNMVEHEFKDEEDADEGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDNTKGVAEAPIHDSKENSKVGNMNFSFGSNPSNANGVQNVMDVKGNSDDPINYFSSLNFEANFGVFNEFTRPLFDDSEGSFSFVMPGSFKSGGESSSDNLL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5443g00006 488 MobiDBLite consensus disorder prediction 1 47 - -
Mupr5443g00006 488 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 87 463 IPR044300 GO:0010044|GO:0010447
Mupr5443g00006 488 SUPERFAMILY beta-beta-alpha zinc fingers 240 268 IPR036236 -
Mupr5443g00006 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 242 269 IPR013087 -
Mupr5443g00006 488 Gene3D Classic Zinc Finger 226 292 - -
Mupr5443g00006 488 SMART c2h2final6 242 264 IPR013087 -
Mupr5443g00006 488 SMART c2h2final6 328 350 IPR013087 -
Mupr5443g00006 488 SMART c2h2final6 290 323 IPR013087 -
Mupr5443g00006 488 MobiDBLite consensus disorder prediction 64 101 - -
Mupr5443g00006 488 MobiDBLite consensus disorder prediction 1 51 - -
Mupr5443g00006 488 ProSitePatterns Zinc finger C2H2 type domain signature. 244 264 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5443g00006 Mupr-Chr5443 37982 39544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5443g00006 209 488 C2H2 Transcription Factor Family AT1G34370 68.601 1.12e-132 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr5443g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5443g00006 - - gmx:100500526 866.3