Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr5423g00004 ATGGCTGGGAAGGAAGATAATCGAATATTTGTGGGAGGTTTATCTTGGGACGTTACAGAGCGTCAACTCGAGCACGCCTTTGCTCGTTACGGCAAAATTCTCGAATGCCAGATCATGATGGAAAGGGATACAGGGCGTCCTCGTGGATTTGGGTTTATCACATTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGTATGATCTCAGTCAACAAGGCACAGCCCAAGATGGGGGGTGATGATGTAGACCAAGGTTACAGAAGTGGCTACTCATCAGGTGGTAGGGGAAGCTATGGGGCTGGAGATAGGGTAGGACAAGATGACTGCTTCAAATGTGGGCGTCCCGGCCACTGGGCCCGAGATTGCCCTTTGGCAGGAGGTGGTCGTGGTAGGGGTGGTAGTTCATTTCCTTCACGTCCTAGGTTTGGAGCTGCTGGTGGACATGGGGATCGCCTTGGTGGTGAACGTGATCGATACATTGATGATCGTTATGACGGAGGACGATATGGAGATAGGGATCGTTTTGACAACCGTGATTACAAATATGGCACCCGTGATCGCTATACTAGTGACAGGTATGGAAGCAGTGGAGATCGATTCCCAAGTGAACGATACGGGGGTGGGTCAGATAATTACCCACAAAATGGGTATGGGAAGGAAAGAGGCTATGACAGGTATGGTGGGGCAAGAGGAGGTGGTGGTGAAAGGTATGGAAGTGGAGTGGGAGGTCGAGATGAAGGAAGGAGTTATAGGAGTAGACCTGGCCCATACGACCGCCCAACCAGGGCTGCTCGCCCATCTCTTGACCGCTACTGA 846 0.5142 MAGKEDNRIFVGGLSWDVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRMISVNKAQPKMGGDDVDQGYRSGYSSGGRGSYGAGDRVGQDDCFKCGRPGHWARDCPLAGGGRGRGGSSFPSRPRFGAAGGHGDRLGGERDRYIDDRYDGGRYGDRDRFDNRDYKYGTRDRYTSDRYGSSGDRFPSERYGGGSDNYPQNGYGKERGYDRYGGARGGGGERYGSGVGGRDEGRSYRSRPGPYDRPTRAARPSLDRY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr5423g00004 281 SUPERFAMILY Retrovirus zinc finger-like domains 102 138 IPR036875 GO:0003676|GO:0008270
Mupr5423g00004 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Mupr5423g00004 281 ProSiteProfiles Zinc finger CCHC-type profile. 119 133 IPR001878 GO:0003676|GO:0008270
Mupr5423g00004 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Mupr5423g00004 281 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Mupr5423g00004 281 Gene3D - 115 151 - -
Mupr5423g00004 281 Gene3D - 1 114 IPR012677 -
Mupr5423g00004 281 MobiDBLite consensus disorder prediction 160 203 - -
Mupr5423g00004 281 MobiDBLite consensus disorder prediction 83 110 - -
Mupr5423g00004 281 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 274 - -
Mupr5423g00004 281 MobiDBLite consensus disorder prediction 135 281 - -
Mupr5423g00004 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Mupr5423g00004 281 SUPERFAMILY RNA-binding domain, RBD 4 111 IPR035979 GO:0003676
Mupr5423g00004 281 FunFam Glycine-rich RNA-binding protein RZ1B isoform C 118 156 - -
Mupr5423g00004 281 FunFam glycine-rich RNA-binding protein RZ1C 1 114 - -
Mupr5423g00004 281 SMART c2hcfinal6 118 134 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr5423g00004 Mupr-Chr5423 35593 40639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr5423g00004 9 88 C2H2 Transcription Factor Family AT2G19380 42.500 3.72e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr5423g00004 - - gmx:100809519 432.565