Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr53g00002 ATGAAGTCCTTGAAGACCCTCTTCCTTCTAGCAATGCTAATGGCTTTGGGCATTTCTCTGTCAGCAATATCTCCCGGAAATGAAGAAGCAAAAGGGACAAAGCGATTCCTTTCCAATGGGGTGGTGCTGACATGTGACAAATACCCAAAGGTATGTCACATTAAAGGTAGCGCAGGATCTGATTGCTGTATGAACAAATGTGTCAACTTGTCCACAGATGGCTCCAACTGCGGCAAATGTGGAAAGAAATGCAGCTTTGGAAAGATGTGTTGCCAAGACAAGTACCACAACACTCCCCAAGCCGTTTCAAAATATATTCCCAAGAGTCCTAAGAAACCATTCCTCAATGTGATAGACTCTTGCTGGCGGGCCAGGCCAAATTGGGCTTTGAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTCGGCAAAGATGCCACAGGAGGCAAGTATGGTGCAATATACCGAGTCACAGACCCCTCTGATGACCCTGCAAACCCAAAACCAGGTACACTCCGCTATGGTGCAATCCAAACGGAGCCACTCTGGATTGTTTTTGACAGAGACATGGCTATTACGCTCGAAAATGAGCTTATTGTGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGTGGATGGGCCTTGCATTACAATACAAGGTGTTAGTTATGTTATCATACATGGCATTAGCATCCATGATTGTAAACCAGCTAAGCCTGGCCTTGTGAGGAGTACTCCTCAGCATGTTGGCCATCGTCAAGGCTCCGATGGAGATGCCATTAGCATATTTTCTTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGCACCGATGGCCTTATCGATGTTATTCATGCCTCAACTGCCATTACCATTTCTAACAACTACTTCACCCAGCATGACAAAGTTATGTTGCTAGGACATAATGACGAATACACGGCAGATAAAATAATGAGAGTAACAATAGCTTTCAACCAATTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTCGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCAAATGATCCAAATGCAAAACAGATTACCAAGAGGGAAGTGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGACTTATTCCTAAATGGTGCTTATTTTGTACCGTCTGGCTTTGGAAGCTGTGCCCCAAATTATTCACCTATTCAATCTTTTACTGCTGCTCCAGCGTACATGGTGCCTGCAATAACTCTCAATGCTGGCCCCACAAATTGTTTTGTTGGGAGACCATGCTAA 1389 0.4406 MKSLKTLFLLAMLMALGISLSAISPGNEEAKGTKRFLSNGVVLTCDKYPKVCHIKGSAGSDCCMNKCVNLSTDGSNCGKCGKKCSFGKMCCQDKYHNTPQAVSKYIPKSPKKPFLNVIDSCWRARPNWALNRQALADCAIGFGKDATGGKYGAIYRVTDPSDDPANPKPGTLRYGAIQTEPLWIVFDRDMAITLENELIVNSYKTIDGRGAKVEIVDGPCITIQGVSYVIIHGISIHDCKPAKPGLVRSTPQHVGHRQGSDGDAISIFSSSNIWIDHCFLARCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHNDEYTADKIMRVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPNAKQITKREVKENWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSPIQSFTAAPAYMVPAITLNAGPTNCFVGRPC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr53g00002 462 Gene3D - 115 455 IPR012334 -
Mupr53g00002 462 Pfam Pectate lyase 198 380 IPR002022 -
Mupr53g00002 462 PANTHER PECTATE LYASE 18-RELATED 94 460 IPR045032 GO:0030570
Mupr53g00002 462 Pfam Stigma-specific protein, Stig1 34 94 IPR006969 -
Mupr53g00002 462 SUPERFAMILY Pectin lyase-like 116 453 IPR011050 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 138 155 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 161 186 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 433 456 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 197 213 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 261 282 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 363 382 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Mupr53g00002 462 PRINTS Pollen allergen Amb family signature 403 427 IPR018082 -
Mupr53g00002 462 SMART amb_all 189 386 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr53g00002 Mupr-Chr53 3364 7685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr53g00002 116 462 Polysaccharide Lyase AT1G11920 70.690 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr53g00002 K01728 - gmx:100807483 696.427